Protein

View in Explore
Genbank accession
AYH92140.1 [GenBank]
Protein name
glycerophosphodiester phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MAYYDKETSDELKDKFKDLAKPNGADFSGLIDYFDKGLQGMDDKGDKGDTAVIGENSVNTINLVDKASTYAKRTVLGNITSVNCTKKPANYDTAAGTLTIYKGTIVTHGKGNFETSADVVLDVIGTGSRQKKIMFDTITNTFFALPYNDYTSVNDENCLFLGTVNSYPDNQTINLVFDCTIDGIYPTVSKEKSIPTKSLNINSRVSRIILNSNGQFPNMDTSNRTLTFYNDTILVLSTGEYYILPETVVDLTIDPSSALKIYYDTFNKVFTVRAYGKLVNEDNWIFVCAVRTSIGALSIPCAYNVNGKPFGLTIPDSVVKNPLNAHVKAVLHRGYNTVAPENTIPAYELAKKMGFSYVETDVKWTSDGVPILLHDGTVDRTSDGTGAIADLTFSYARSLDFGSWKGSEYVGTLIPTFEEFILSCKKLNLHPYIHINELVTVEKAQELVGIVRKQGMIRNVSWISFTTAALTNICTAYPKSRIGMLSGTFDGTILDDARALKTTENDVFLDVDTPALTKEMIEAALSEDIYVETYTVDYSNLVEGYVNMGVSGITTNSLNIAEILGNTY
Physico‐chemical
properties
protein length:568 AA
molecular weight: 62464,80760 Da
isoelectric point:4,87607
aromaticity:0,09859
hydropathy:-0,12993

Domains

View on InterPro
Domain architecture
AYH92140.1
1 568 aa
STR 321–565 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AYH92140.1
1 568 aa
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,7227
Central domain 156 535 381 0,7175
C-terminal 536 568 32 0,2756
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Lactobacillus phage Dionysus [NCBI] · taxon 2315484
Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes
Host No host information

Coding sequence (CDS)

Genbank protein accession
AYH92140.1 [NCBI]
Genbank nucleotide accession
MH809530 [NCBI]
CDS location
range 78932 -> 80638
strand +
CDS
ATGGCATATTATGATAAGGAAACAAGCGATGAATTGAAAGATAAATTTAAAGATTTAGCTAAGCCAAATGGAGCAGATTTTTCAGGGCTCATAGACTACTTTGACAAAGGATTACAGGGTATGGATGACAAAGGCGACAAAGGCGATACAGCGGTTATTGGTGAAAATTCAGTAAATACCATTAATTTAGTTGATAAAGCATCCACATATGCAAAAAGAACCGTGCTTGGCAATATCACATCAGTTAATTGCACAAAAAAACCAGCTAATTACGATACGGCAGCAGGGACTTTAACCATTTATAAAGGTACGATTGTTACTCACGGCAAGGGAAATTTCGAAACTTCAGCAGATGTTGTTTTAGATGTGATTGGTACTGGAAGCCGACAAAAAAAAATAATGTTTGACACAATAACTAATACTTTTTTTGCTTTACCTTATAATGATTATACAAGCGTGAATGATGAAAATTGTTTGTTTTTAGGAACTGTTAATAGCTATCCAGATAACCAAACAATAAACTTGGTTTTCGATTGCACAATTGACGGCATTTATCCTACAGTTTCAAAAGAGAAATCAATACCGACAAAGAGTTTAAATATAAATTCAAGAGTTTCACGTATTATTTTAAACTCAAACGGTCAATTCCCTAATATGGATACGTCTAATAGAACATTAACTTTTTACAATGATACTATTTTGGTTTTGTCAACTGGTGAATATTATATTTTGCCTGAGACAGTTGTGGACTTAACTATTGACCCGTCCAGTGCTTTAAAAATATATTATGACACTTTCAACAAGGTTTTTACGGTAAGAGCCTATGGAAAACTAGTAAACGAAGATAATTGGATATTCGTTTGTGCGGTTAGAACATCTATTGGAGCATTATCTATCCCTTGTGCATACAACGTAAACGGAAAGCCTTTTGGACTTACGATTCCTGATAGTGTAGTTAAGAATCCTCTAAATGCTCATGTTAAAGCAGTTTTACACAGAGGATATAACACGGTAGCACCAGAAAACACTATTCCTGCATACGAGTTAGCCAAAAAAATGGGTTTTAGTTATGTTGAAACAGATGTTAAATGGACGAGTGATGGCGTACCCATCTTACTACATGACGGCACGGTAGACCGCACGTCTGACGGAACAGGAGCAATCGCTGATTTAACTTTTAGTTATGCGCGTTCGTTGGATTTCGGAAGCTGGAAAGGTAGTGAGTATGTAGGAACATTAATTCCCACTTTTGAAGAATTTATTTTGAGTTGTAAAAAATTAAACTTGCATCCTTATATTCACATCAATGAACTTGTGACAGTTGAAAAAGCACAGGAATTAGTCGGTATAGTTAGAAAACAAGGAATGATAAGAAATGTATCGTGGATAAGTTTTACCACTGCCGCATTAACAAATATTTGTACAGCGTACCCAAAATCGAGAATAGGCATGTTGTCGGGTACTTTTGATGGGACTATCTTAGATGATGCGAGAGCGTTAAAAACAACTGAAAACGATGTTTTCCTAGATGTAGACACTCCAGCATTAACAAAAGAAATGATTGAAGCTGCTTTATCGGAAGACATCTACGTAGAAACATATACGGTGGATTATAGTAATCTTGTGGAAGGTTATGTAAATATGGGGGTTAGTGGTATCACTACGAATAGCCTAAATATTGCCGAGATACTAGGCAACACATATTAA

Genome Context

Tertiary structure

AYH92140.1
ESMFold structure
Source ESMFold
pLDDT 75.5
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Lactobacillus phages that infect wine-derived L. plantarum strains Kyrkou,I., Byth Carstens,A., Ellegaard-Jensen,L., Kot,W. and Hestbjerg Hansen,L. 2018-12-03 — GenBank