Protein

View in Explore
Genbank accession
AYH92140.1 [GenBank]
Protein name
glycerophosphodiester phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MAYYDKETSDELKDKFKDLAKPNGADFSGLIDYFDKGLQGMDDKGDKGDTAVIGENSVNTINLVDKASTYAKRTVLGNITSVNCTKKPANYDTAAGTLTIYKGTIVTHGKGNFETSADVVLDVIGTGSRQKKIMFDTITNTFFALPYNDYTSVNDENCLFLGTVNSYPDNQTINLVFDCTIDGIYPTVSKEKSIPTKSLNINSRVSRIILNSNGQFPNMDTSNRTLTFYNDTILVLSTGEYYILPETVVDLTIDPSSALKIYYDTFNKVFTVRAYGKLVNEDNWIFVCAVRTSIGALSIPCAYNVNGKPFGLTIPDSVVKNPLNAHVKAVLHRGYNTVAPENTIPAYELAKKMGFSYVETDVKWTSDGVPILLHDGTVDRTSDGTGAIADLTFSYARSLDFGSWKGSEYVGTLIPTFEEFILSCKKLNLHPYIHINELVTVEKAQELVGIVRKQGMIRNVSWISFTTAALTNICTAYPKSRIGMLSGTFDGTILDDARALKTTENDVFLDVDTPALTKEMIEAALSEDIYVETYTVDYSNLVEGYVNMGVSGITTNSLNIAEILGNTY
Physico‐chemical
properties
protein length:568 AA
molecular weight: 62464,80760 Da
isoelectric point:4,87607
aromaticity:0,09859
hydropathy:-0,12993

Domains

Domains [InterPro]
PTHR46211
Unmapped
299–560
PTHR46211
IPR017946
STR
321–565
IPR017946
IPR017946
STR
325–565
IPR017946
IPR030395
ENZ
327–565
IPR030395
IPR030395
ENZ
332–557
IPR030395
IPR017946
STR
332–560
IPR017946
AYH92140.1
1 568
Architecture
STR
STR 321-565 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYH92140.1
1 568
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,7227
Central domain 156 535 381 0,7175
C-terminal 536 568 32 0,2756
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-535
C-terminal
536-568

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Dionysus
[NCBI] 		2315484 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYH92140.1 [NCBI]
Genbank nucleotide accession
MH809530 [NCBI]
CDS location
range 78932 -> 80638
strand +
CDS
ATGGCATATTATGATAAGGAAACAAGCGATGAATTGAAAGATAAATTTAAAGATTTAGCTAAGCCAAATGGAGCAGATTTTTCAGGGCTCATAGACTACTTTGACAAAGGATTACAGGGTATGGATGACAAAGGCGACAAAGGCGATACAGCGGTTATTGGTGAAAATTCAGTAAATACCATTAATTTAGTTGATAAAGCATCCACATATGCAAAAAGAACCGTGCTTGGCAATATCACATCAGTTAATTGCACAAAAAAACCAGCTAATTACGATACGGCAGCAGGGACTTTAACCATTTATAAAGGTACGATTGTTACTCACGGCAAGGGAAATTTCGAAACTTCAGCAGATGTTGTTTTAGATGTGATTGGTACTGGAAGCCGACAAAAAAAAATAATGTTTGACACAATAACTAATACTTTTTTTGCTTTACCTTATAATGATTATACAAGCGTGAATGATGAAAATTGTTTGTTTTTAGGAACTGTTAATAGCTATCCAGATAACCAAACAATAAACTTGGTTTTCGATTGCACAATTGACGGCATTTATCCTACAGTTTCAAAAGAGAAATCAATACCGACAAAGAGTTTAAATATAAATTCAAGAGTTTCACGTATTATTTTAAACTCAAACGGTCAATTCCCTAATATGGATACGTCTAATAGAACATTAACTTTTTACAATGATACTATTTTGGTTTTGTCAACTGGTGAATATTATATTTTGCCTGAGACAGTTGTGGACTTAACTATTGACCCGTCCAGTGCTTTAAAAATATATTATGACACTTTCAACAAGGTTTTTACGGTAAGAGCCTATGGAAAACTAGTAAACGAAGATAATTGGATATTCGTTTGTGCGGTTAGAACATCTATTGGAGCATTATCTATCCCTTGTGCATACAACGTAAACGGAAAGCCTTTTGGACTTACGATTCCTGATAGTGTAGTTAAGAATCCTCTAAATGCTCATGTTAAAGCAGTTTTACACAGAGGATATAACACGGTAGCACCAGAAAACACTATTCCTGCATACGAGTTAGCCAAAAAAATGGGTTTTAGTTATGTTGAAACAGATGTTAAATGGACGAGTGATGGCGTACCCATCTTACTACATGACGGCACGGTAGACCGCACGTCTGACGGAACAGGAGCAATCGCTGATTTAACTTTTAGTTATGCGCGTTCGTTGGATTTCGGAAGCTGGAAAGGTAGTGAGTATGTAGGAACATTAATTCCCACTTTTGAAGAATTTATTTTGAGTTGTAAAAAATTAAACTTGCATCCTTATATTCACATCAATGAACTTGTGACAGTTGAAAAAGCACAGGAATTAGTCGGTATAGTTAGAAAACAAGGAATGATAAGAAATGTATCGTGGATAAGTTTTACCACTGCCGCATTAACAAATATTTGTACAGCGTACCCAAAATCGAGAATAGGCATGTTGTCGGGTACTTTTGATGGGACTATCTTAGATGATGCGAGAGCGTTAAAAACAACTGAAAACGATGTTTTCCTAGATGTAGACACTCCAGCATTAACAAAAGAAATGATTGAAGCTGCTTTATCGGAAGACATCTACGTAGAAACATATACGGTGGATTATAGTAATCTTGTGGAAGGTTATGTAAATATGGGGGTTAGTGGTATCACTACGAATAGCCTAAATATTGCCGAGATACTAGGCAACACATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4a28bc5a10a844d86abcd2f8037d0683e9de8b88508603dacb63bef9176f0efe
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7553
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lactobacillus phages that infect wine-derived L. plantarum strains Kyrkou,I., Byth Carstens,A., Ellegaard-Jensen,L., Kot,W. and Hestbjerg Hansen,L. 2018-12-03 — GenBank