Protein

View in Explore
Genbank accession
QIG76021.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MQHIRTGYKRGESFEDEYFTPSGEIVNNDDLKKHLTAIIEEVLPDRLDDDALMQEIHENMDLLLPDRLSQLYLDGRYPLKTDLNPFVKKDELAYNVKDRGVIGNNVADDTASLNAAAAAIYAINPDATMYIPPGTYKITGPVQVKCRLSASEATFNYTGNGDALIIGDSAIYTQRRMFALPKIIKQGRTNLWDGASRGVVMYNLNECIVFSNFIQDFEIGMYLMGNDKGFAYNTIFMGTLWENHRQQVLDCTNLGWINENTFIGGRWQKSLSKGATVDDPNSYEVYGVAQNVEGGPNNNVWYRPCIEGPNVSQYRVYINGSHNEFHHARWETPSNAAFRVRWGANSVSNLLWKGYGLVNCVETFDNPTATISPSERYDAAGMYLNNTVNTTGQVIPNNADTTVTGWTAPVARGITYDSTTGEFTPRPGRWRIFATVSFAPNATGRRFAKIMTGATLLKLNEKAPNATVRNTQELTASRRFNGAETFKLVVNQTSGADLALDSSSGYVTISADYLGG
Physico‐chemical
properties
protein length:516 AA
molecular weight: 57300,43010 Da
isoelectric point:5,43525
aromaticity:0,10465
hydropathy:-0,39031

Domains

Domains [InterPro]
DC_0927
STR
15–514
DC_0927
IPR012334
STR
87–336
IPR012334
IPR011050
STR
91–407
IPR011050
IPR024535
ENZ
94–150
IPR024535
QIG76021.1
1 516
Architecture
STR
STR 15-514 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG76021.1
1 516
Domain Start End Length (AA) Confidence
N-terminal 1 107 107 0,9692
Central domain 108 376 270 0,9874
C-terminal 377 516 139 0,9927
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-107
Central
108-376
C-terminal
377-516

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_N3_8
[NCBI] 		2509748 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG76021.1 [NCBI]
Genbank nucleotide accession
MN988551.1 [NCBI]
CDS location
range 16587 -> 18137
strand +
CDS
GTGCAACACATTCGCACAGGGTACAAGCGGGGCGAAAGCTTCGAAGATGAATACTTCACTCCGTCTGGTGAAATCGTCAACAATGACGACCTGAAAAAGCACCTGACAGCAATCATTGAAGAAGTCTTGCCAGACAGGCTTGACGATGACGCACTCATGCAGGAAATTCATGAAAACATGGACTTACTCCTGCCTGACCGTCTTTCACAGCTTTACCTTGACGGGCGCTACCCACTCAAAACAGATCTAAATCCTTTCGTCAAAAAGGACGAACTCGCCTACAATGTCAAAGACAGGGGAGTGATAGGAAACAACGTTGCGGATGACACGGCATCATTGAACGCCGCAGCGGCAGCGATTTACGCTATCAATCCTGACGCAACAATGTACATTCCACCGGGAACGTACAAGATCACTGGCCCTGTTCAGGTGAAATGTAGACTGTCCGCCAGTGAGGCAACATTTAATTACACTGGCAACGGCGACGCACTAATCATCGGCGATTCCGCGATTTACACGCAACGTCGTATGTTCGCCCTTCCTAAGATTATCAAGCAAGGTCGCACCAACTTGTGGGATGGTGCGTCTCGCGGCGTTGTCATGTACAACTTGAATGAGTGCATTGTTTTCAGCAATTTCATTCAGGACTTTGAAATTGGCATGTACCTCATGGGCAATGACAAAGGATTTGCCTATAACACCATATTCATGGGCACCCTTTGGGAAAATCACCGACAGCAAGTTCTCGATTGCACCAATCTTGGATGGATCAATGAAAACACATTCATTGGTGGACGCTGGCAAAAATCCCTTAGCAAGGGCGCAACGGTAGATGATCCAAACTCCTACGAAGTTTATGGAGTCGCTCAAAACGTAGAGGGTGGGCCAAACAACAACGTGTGGTACCGTCCATGCATTGAAGGTCCAAACGTCTCCCAATACCGCGTATACATCAATGGATCACACAACGAATTCCATCACGCGCGTTGGGAAACCCCATCAAACGCCGCATTCCGAGTACGATGGGGCGCAAACTCCGTCAGCAACCTACTGTGGAAGGGCTACGGGCTAGTCAACTGCGTCGAAACCTTCGACAACCCAACAGCAACCATAAGCCCCTCAGAACGCTATGACGCAGCAGGAATGTACCTCAACAACACTGTCAACACCACGGGGCAGGTGATCCCCAACAACGCTGACACAACCGTAACAGGGTGGACAGCCCCAGTAGCACGCGGAATCACCTACGACAGCACAACAGGCGAATTCACGCCACGCCCTGGACGATGGAGAATATTCGCCACAGTATCATTCGCCCCCAACGCAACAGGGCGACGTTTCGCAAAAATCATGACAGGAGCAACACTGCTAAAGCTCAATGAAAAAGCGCCAAACGCGACAGTGCGCAACACACAGGAACTCACAGCATCAAGGCGGTTCAACGGGGCCGAAACATTCAAACTCGTTGTAAACCAAACATCAGGCGCGGACCTAGCTTTGGATTCATCATCAGGCTACGTCACCATATCGGCTGACTACCTCGGAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5edeb17c57ecefe49e95daaf21ddb91780889bb5c47d776f9618aeb8565146a2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7754
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank