Protein

View in Explore
Genbank accession
QIG76021.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
TF
Evidence Phold
Probability 1,00
Protein sequence
MQHIRTGYKRGESFEDEYFTPSGEIVNNDDLKKHLTAIIEEVLPDRLDDDALMQEIHENMDLLLPDRLSQLYLDGRYPLKTDLNPFVKKDELAYNVKDRGVIGNNVADDTASLNAAAAAIYAINPDATMYIPPGTYKITGPVQVKCRLSASEATFNYTGNGDALIIGDSAIYTQRRMFALPKIIKQGRTNLWDGASRGVVMYNLNECIVFSNFIQDFEIGMYLMGNDKGFAYNTIFMGTLWENHRQQVLDCTNLGWINENTFIGGRWQKSLSKGATVDDPNSYEVYGVAQNVEGGPNNNVWYRPCIEGPNVSQYRVYINGSHNEFHHARWETPSNAAFRVRWGANSVSNLLWKGYGLVNCVETFDNPTATISPSERYDAAGMYLNNTVNTTGQVIPNNADTTVTGWTAPVARGITYDSTTGEFTPRPGRWRIFATVSFAPNATGRRFAKIMTGATLLKLNEKAPNATVRNTQELTASRRFNGAETFKLVVNQTSGADLALDSSSGYVTISADYLGG
Physico‐chemical
properties
protein length:516 AA
molecular weight: 57300,43010 Da
isoelectric point:5,43525
aromaticity:0,10465
hydropathy:-0,39031

Domains

Domains [InterPro]
IPR012334
87–336
IPR012334
IPR011050
91–407
IPR011050
IPR024535
94–150
IPR024535
QIG76021.1
1 516
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_N3_8
[NCBI] 		2509748 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG76021.1 [NCBI]
Genbank nucleotide accession
MN988551 [NCBI]
CDS location
range 16587 -> 18137
strand +
CDS
GTGCAACACATTCGCACAGGGTACAAGCGGGGCGAAAGCTTCGAAGATGAATACTTCACTCCGTCTGGTGAAATCGTCAACAATGACGACCTGAAAAAGCACCTGACAGCAATCATTGAAGAAGTCTTGCCAGACAGGCTTGACGATGACGCACTCATGCAGGAAATTCATGAAAACATGGACTTACTCCTGCCTGACCGTCTTTCACAGCTTTACCTTGACGGGCGCTACCCACTCAAAACAGATCTAAATCCTTTCGTCAAAAAGGACGAACTCGCCTACAATGTCAAAGACAGGGGAGTGATAGGAAACAACGTTGCGGATGACACGGCATCATTGAACGCCGCAGCGGCAGCGATTTACGCTATCAATCCTGACGCAACAATGTACATTCCACCGGGAACGTACAAGATCACTGGCCCTGTTCAGGTGAAATGTAGACTGTCCGCCAGTGAGGCAACATTTAATTACACTGGCAACGGCGACGCACTAATCATCGGCGATTCCGCGATTTACACGCAACGTCGTATGTTCGCCCTTCCTAAGATTATCAAGCAAGGTCGCACCAACTTGTGGGATGGTGCGTCTCGCGGCGTTGTCATGTACAACTTGAATGAGTGCATTGTTTTCAGCAATTTCATTCAGGACTTTGAAATTGGCATGTACCTCATGGGCAATGACAAAGGATTTGCCTATAACACCATATTCATGGGCACCCTTTGGGAAAATCACCGACAGCAAGTTCTCGATTGCACCAATCTTGGATGGATCAATGAAAACACATTCATTGGTGGACGCTGGCAAAAATCCCTTAGCAAGGGCGCAACGGTAGATGATCCAAACTCCTACGAAGTTTATGGAGTCGCTCAAAACGTAGAGGGTGGGCCAAACAACAACGTGTGGTACCGTCCATGCATTGAAGGTCCAAACGTCTCCCAATACCGCGTATACATCAATGGATCACACAACGAATTCCATCACGCGCGTTGGGAAACCCCATCAAACGCCGCATTCCGAGTACGATGGGGCGCAAACTCCGTCAGCAACCTACTGTGGAAGGGCTACGGGCTAGTCAACTGCGTCGAAACCTTCGACAACCCAACAGCAACCATAAGCCCCTCAGAACGCTATGACGCAGCAGGAATGTACCTCAACAACACTGTCAACACCACGGGGCAGGTGATCCCCAACAACGCTGACACAACCGTAACAGGGTGGACAGCCCCAGTAGCACGCGGAATCACCTACGACAGCACAACAGGCGAATTCACGCCACGCCCTGGACGATGGAGAATATTCGCCACAGTATCATTCGCCCCCAACGCAACAGGGCGACGTTTCGCAAAAATCATGACAGGAGCAACACTGCTAAAGCTCAATGAAAAAGCGCCAAACGCGACAGTGCGCAACACACAGGAACTCACAGCATCAAGGCGGTTCAACGGGGCCGAAACATTCAAACTCGTTGTAAACCAAACATCAGGCGCGGACCTAGCTTTGGATTCATCATCAGGCTACGTCACCATATCGGCTGACTACCTCGGAGGATAA

Tertiary structure

PDB ID
5edeb17c57ecefe49e95daaf21ddb91780889bb5c47d776f9618aeb8565146a2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7754
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank