Phage RBP Database

Genbank accession

YP_010767005.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,91

TF

Evidence RBPdetect2

Probability 0,99

Protein sequence

MANITKPIGLSNVWADGGTKIDPGAAKVNIGWVVQLPPYEYQNWIDNRQDRAIAHFSQHGVPEWDGATEYQGLLSYAQGSDGIIYKCIQTNVNKDPANPLNDAFWARAFEDYGSVAAVQAQLNAHITNYQSLSGIGNVAGARANLSVYSKVESDTRFAGLNGNSAQVFAVAVATQPEHAVRLGQVNSLLTQATEANLGVVRLATSGVTEAGTDDLRAITPLKAATVYLKKSGNLAGLGNTVTARNNLGLGDIATESQATFAKTANNLSDLASVVSARSNLGLTSTATQPETYFLRTALNLADLTNTVTARANLGLTSLANTPAADVLHRADNLQGLPNVALARSNLGLSDSVIYPSNTWLVRVNNLSDLPNAQAARNNLGLGNLSTRNVFGVPGDLDFTISKALGGYTNLPNGLIMQWGQGPALGDDQGTTVGLFVAMNVVSVQVTGIGAATNGIGPGFLTQAWTTTSFQVYNNYNSGPWRPFSWLAIGYV

Physico‐chemical properties

protein length:	491 AA
molecular weight:	51755,15800 Da
isoelectric point:	5,75514
aromaticity:	0,07739
hydropathy:	-0,06741

Domain architecture

YP_010767005.1

1 491 aa

RBD 400–490 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.40.3940
RBD

G3DSA:2.60.40.3940

IPR054075
RBD

IPR054075

YP_010767005.1

1491 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0043
STR

DC_0043 DC_0362

YP_010767005.1

1491 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.40.3940	RBD	G3DSA:2.60.40.3940	400	490	Merged direct domain	G3DSA:2.60.40.3940	C-terminal	Low	Positional only	77 proteins / 77 hits
IPR054075	RBD	DC_0717	410	490	InterPro cluster	Putative tail fiber protein gp53-like, C-terminal	C-terminal	Low	Positional only	174 proteins / 174 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage psageK4e [NCBI] · taxon 2875723

Uroviricota Caudoviricetes Vandenendeviridae Otagovirus Otagovirus psagek4e

Host

Pseudomonas syringae pv. actinidiae [NCBI] · taxon 103796

Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas

Genbank protein accession

YP_010767005.1 [NCBI]

Genbank nucleotide accession

NC_073682.1 [NCBI]

CDS location

range 55295 -> 56770
strand +

CDS

ATGGCAAACATTACAAAACCAATTGGCCTGAGCAATGTTTGGGCTGATGGTGGTACGAAGATTGATCCGGGTGCCGCTAAGGTTAACATCGGGTGGGTTGTTCAACTTCCACCATACGAATATCAAAACTGGATTGACAACCGTCAAGATCGTGCCATTGCTCACTTTAGTCAGCATGGTGTTCCAGAATGGGATGGTGCTACAGAGTACCAAGGACTTCTGAGCTACGCTCAAGGCTCCGATGGTATCATCTACAAGTGCATCCAAACCAACGTAAACAAAGACCCAGCCAACCCTTTGAACGATGCCTTCTGGGCACGTGCGTTTGAAGACTATGGTTCTGTTGCTGCTGTACAGGCACAGTTGAACGCTCACATCACAAACTACCAATCTCTTTCTGGAATTGGTAACGTTGCTGGTGCCCGAGCTAACTTGTCTGTATACTCCAAAGTTGAAAGCGACACACGCTTCGCTGGCTTGAACGGTAACTCTGCTCAAGTGTTTGCTGTTGCTGTTGCCACACAACCAGAACATGCTGTACGTCTTGGGCAAGTTAATAGCTTGCTGACACAGGCTACAGAAGCAAACCTTGGTGTTGTTCGTCTTGCAACCAGCGGTGTAACAGAAGCTGGCACAGACGACCTGAGAGCCATCACCCCATTGAAGGCTGCTACAGTCTACCTCAAGAAGAGCGGAAACCTTGCTGGACTTGGAAACACTGTTACAGCTCGAAACAACCTTGGGCTTGGTGATATCGCAACTGAGAGTCAAGCGACGTTTGCTAAGACTGCAAACAACCTGAGCGACCTTGCAAGTGTTGTATCGGCTCGTAGTAACCTTGGACTAACATCCACTGCTACTCAGCCTGAAACATACTTCCTGAGAACTGCTCTAAACCTTGCAGACCTCACAAACACTGTTACTGCAAGAGCCAACCTTGGGCTTACATCTTTGGCTAACACTCCTGCTGCTGACGTTCTCCACAGAGCTGACAACTTGCAGGGGCTTCCTAACGTCGCTCTCGCACGTTCCAACCTTGGACTGTCTGACTCTGTTATCTACCCAAGCAACACTTGGCTGGTAAGAGTTAACAACCTGTCCGACCTGCCTAACGCACAAGCTGCACGTAACAACTTGGGACTTGGTAACTTGTCTACACGTAACGTGTTCGGTGTACCGGGTGATCTTGACTTCACAATCTCCAAAGCTCTTGGTGGATATACAAACCTACCAAACGGTTTGATTATGCAGTGGGGCCAAGGCCCAGCTCTGGGAGACGACCAAGGAACAACAGTTGGATTGTTTGTGGCGATGAACGTTGTATCTGTGCAAGTTACAGGTATCGGTGCTGCAACTAACGGTATCGGGCCGGGGTTCTTGACTCAAGCTTGGACAACCACAAGCTTCCAAGTTTACAACAACTACAACAGTGGGCCGTGGCGTCCATTCAGTTGGCTAGCAATCGGGTACGTTTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)