Phage RBP Database

Genbank accession

YP_010767005.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,91

TF

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C3 confidence 1,000

C3	1,000
C1	0,006
D3	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MANITKPIGLSNVWADGGTKIDPGAAKVNIGWVVQLPPYEYQNWIDNRQDRAIAHFSQHGVPEWDGATEYQGLLSYAQGSDGIIYKCIQTNVNKDPANPLNDAFWARAFEDYGSVAAVQAQLNAHITNYQSLSGIGNVAGARANLSVYSKVESDTRFAGLNGNSAQVFAVAVATQPEHAVRLGQVNSLLTQATEANLGVVRLATSGVTEAGTDDLRAITPLKAATVYLKKSGNLAGLGNTVTARNNLGLGDIATESQATFAKTANNLSDLASVVSARSNLGLTSTATQPETYFLRTALNLADLTNTVTARANLGLTSLANTPAADVLHRADNLQGLPNVALARSNLGLSDSVIYPSNTWLVRVNNLSDLPNAQAARNNLGLGNLSTRNVFGVPGDLDFTISKALGGYTNLPNGLIMQWGQGPALGDDQGTTVGLFVAMNVVSVQVTGIGAATNGIGPGFLTQAWTTTSFQVYNNYNSGPWRPFSWLAIGYV

Physico‐chemical properties

protein length:	491 AA
molecular weight:	51755,15800 Da
isoelectric point:	5,75514
aromaticity:	0,07739
hydropathy:	-0,06741

Domain architecture

YP_010767005.1

1 491 aa

RBD 400–490 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.40.3940
RBD

G3DSA:2.60.40.3940

IPR054075
RBD

IPR054075

YP_010767005.1

1491 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0043
STR

DC_0043 DC_0362

YP_010767005.1

1491 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.40.3940	RBD	G3DSA:2.60.40.3940	400	490	Merged direct domain	G3DSA:2.60.40.3940	C-terminal	Low	Positional only	77 proteins / 77 hits
IPR054075	RBD	DC_0717	410	490	InterPro cluster	Putative tail fiber protein gp53-like, C-terminal	C-terminal	Low	Positional only	174 proteins / 174 hits

Proteins with similar domain architecture

Phage

Pseudomonas phage psageK4e [NCBI] · taxon 2875723

Uroviricota Caudoviricetes Vandenendeviridae Otagovirus Otagovirus psagek4e

Host

Pseudomonas syringae pv. actinidiae [NCBI] · taxon 103796

Bacteria Proteobacteria Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas

Genbank protein accession

YP_010767005.1 [NCBI]

Genbank nucleotide accession

NC_073682.1 [NCBI]

CDS location

range 55295 -> 56770
strand +

CDS

ATGGCAAACATTACAAAACCAATTGGCCTGAGCAATGTTTGGGCTGATGGTGGTACGAAGATTGATCCGGGTGCCGCTAAGGTTAACATCGGGTGGGTTGTTCAACTTCCACCATACGAATATCAAAACTGGATTGACAACCGTCAAGATCGTGCCATTGCTCACTTTAGTCAGCATGGTGTTCCAGAATGGGATGGTGCTACAGAGTACCAAGGACTTCTGAGCTACGCTCAAGGCTCCGATGGTATCATCTACAAGTGCATCCAAACCAACGTAAACAAAGACCCAGCCAACCCTTTGAACGATGCCTTCTGGGCACGTGCGTTTGAAGACTATGGTTCTGTTGCTGCTGTACAGGCACAGTTGAACGCTCACATCACAAACTACCAATCTCTTTCTGGAATTGGTAACGTTGCTGGTGCCCGAGCTAACTTGTCTGTATACTCCAAAGTTGAAAGCGACACACGCTTCGCTGGCTTGAACGGTAACTCTGCTCAAGTGTTTGCTGTTGCTGTTGCCACACAACCAGAACATGCTGTACGTCTTGGGCAAGTTAATAGCTTGCTGACACAGGCTACAGAAGCAAACCTTGGTGTTGTTCGTCTTGCAACCAGCGGTGTAACAGAAGCTGGCACAGACGACCTGAGAGCCATCACCCCATTGAAGGCTGCTACAGTCTACCTCAAGAAGAGCGGAAACCTTGCTGGACTTGGAAACACTGTTACAGCTCGAAACAACCTTGGGCTTGGTGATATCGCAACTGAGAGTCAAGCGACGTTTGCTAAGACTGCAAACAACCTGAGCGACCTTGCAAGTGTTGTATCGGCTCGTAGTAACCTTGGACTAACATCCACTGCTACTCAGCCTGAAACATACTTCCTGAGAACTGCTCTAAACCTTGCAGACCTCACAAACACTGTTACTGCAAGAGCCAACCTTGGGCTTACATCTTTGGCTAACACTCCTGCTGCTGACGTTCTCCACAGAGCTGACAACTTGCAGGGGCTTCCTAACGTCGCTCTCGCACGTTCCAACCTTGGACTGTCTGACTCTGTTATCTACCCAAGCAACACTTGGCTGGTAAGAGTTAACAACCTGTCCGACCTGCCTAACGCACAAGCTGCACGTAACAACTTGGGACTTGGTAACTTGTCTACACGTAACGTGTTCGGTGTACCGGGTGATCTTGACTTCACAATCTCCAAAGCTCTTGGTGGATATACAAACCTACCAAACGGTTTGATTATGCAGTGGGGCCAAGGCCCAGCTCTGGGAGACGACCAAGGAACAACAGTTGGATTGTTTGTGGCGATGAACGTTGTATCTGTGCAAGTTACAGGTATCGGTGCTGCAACTAACGGTATCGGGCCGGGGTTCTTGACTCAAGCTTGGACAACCACAAGCTTCCAAGTTTACAACAACTACAACAGTGGGCCGTGGCGTCCATTCAGTTGGCTAGCAATCGGGTACGTTTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)