Phage RBP Database

Genbank accession

WAX24049.1 [GenBank]

Protein name

tail tubular protein B

RBP type

TSP

Evidence DepoScope

Probability 1,00

Seq2Symm

C6 confidence 0,148

C6	0,148
C1	0,037
C2	0,021

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAKAGGTYPDILQGVSQKPAHRRRPGXTHEQINVLSDPVNGLVRRRGTRFAASQAVVTSAELRNMDVFDFTQEGKEYALLYRRDASTLGSESFAFLYNKTDEAFIPLVYENSTWVNTLVSGGASSLAAIGSYVYIAGNTTIPTATSTNVWQEQTNIQRLAAWVRTGKYNTTYTVNLTRTDNTVLTVTFKTVTASYPGTLDTSDIPFYLPGGTEPDPAYQKYVNDRVNEYNSAVNEWIVTSAEQTRPEYIAEKLSDALVDAGVSATYIKGGIIIDDDQFKDITVDDEGDGTTFYAAGQEITDATYAVKFHWHGKIIRVRPSGAGADETYYLRAELENGETSGYGSVDWYEAPGVECTIDNLVSQLYIYNGVGYIARNGAGLTSLAPGSGEHPAYGARVAGDGLTSPIPWFIDKPITMLSVFQDRLVVGAQNYVNASRSADYLNFWRGSAVTIEDSDPIEIFAHGSEGDVLRHATLYNGNLVIFGDRQQYGISGDSVFSPKNPLIKSFSANKDSVDAKAQTSGNYIFYAQYGSEGTSLHQMRVGALNGQQTVTDEMSNELDSWLSGTPLQITPLTAPNLVMFRTREHPQDFYLYRYEDNKNNGQRIVDAWSKFQYHPALGEIIGVSSYKKNGLVFTARGSLVACDVFDPKGEPDSHACLDSWASFGTPTGVQTASASIAVNSTSPYFLLGCPYAQSSDFLSQFDDLDAGALEYGVVSEALVIPTNPFPRDQNGQAVLDGRMSLNKVTVDVENTAGMIATVATRNNAVTTTDFEGRILGDSDNLIARQPVYRGQLNISVGREVRECTYEIRSKAWLPLRVTGLSWTGQTFNNVRRVS

Physico‐chemical properties

protein length:	834 AA
molecular weight:	91183,04380 Da
isoelectric point:	4,91057
aromaticity:	0,10444
hydropathy:	-0,31381

Domain architecture

WAX24049.1

1 834 aa

TTP 1–632 · TTP 716–825 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR058003
TTP

IPR058003 IPR058003

WAX24049.1

1834 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0058
STR

DC_0058

WAX24049.1

1834 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR058003	TTP	DC_0684	1	632	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits
IPR058003	TTP	DC_0684	716	825	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WAX24049.1

1 834 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	187	187	0,8619
Central domain	188	387	201	0,3401
C-terminal	388	834	446	0,3126

Note: Constraints were applied during segmentation.
Fixed 3 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Xanthomonas phage F5 [NCBI] · taxon 3003369

Uroviricota Caudoviricetes Autographivirales Gujervirinae Pradovirus

Host

Xanthomonas perforans [NCBI] · taxon 442694

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales

Genbank protein accession

WAX24049.1 [NCBI]

Genbank nucleotide accession

OP583591 [NCBI]

CDS location

range 24427 -> 26931
strand +

CDS

ATGGCGAAGGCGGGAGGTACATACCCCGACATCCTACAGGGTGTCAGTCAGAAACCGGCGCATCGTCGTCGGCCGGGTCNGACGCACGAGCAGATCAACGTGCTGTCCGATCCGGTGAACGGCCTCGTGCGCCGTCGTGGTACGCGGTTCGCTGCTTCCCAAGCCGTTGTCACCTCGGCCGAGCTGCGCAACATGGACGTGTTCGACTTCACGCAGGAGGGCAAGGAGTACGCGCTGCTGTACCGGCGCGACGCCTCTACCCTGGGCAGTGAGTCCTTCGCGTTCCTCTACAACAAGACGGACGAGGCGTTCATCCCACTGGTGTACGAGAACAGCACGTGGGTCAACACACTGGTCAGCGGCGGCGCATCGTCGCTCGCGGCCATCGGCAGCTACGTCTATATCGCGGGTAACACCACGATCCCCACGGCCACCAGCACGAACGTGTGGCAGGAGCAGACGAACATCCAGCGCCTCGCAGCGTGGGTGCGCACCGGCAAGTACAACACCACGTACACGGTGAACCTGACGCGCACGGACAACACCGTGCTTACGGTGACGTTCAAGACGGTGACCGCATCGTACCCCGGAACGCTCGACACCAGCGACATACCGTTCTACCTTCCCGGTGGTACGGAGCCGGACCCGGCGTACCAGAAGTACGTCAACGACCGAGTGAACGAGTACAACTCTGCGGTCAACGAGTGGATCGTGACGAGCGCCGAGCAGACGCGCCCGGAGTACATCGCCGAGAAGTTGTCCGACGCGCTGGTGGATGCAGGCGTGTCCGCCACATACATCAAGGGCGGGATCATCATTGACGACGACCAGTTCAAGGACATCACGGTTGACGACGAGGGCGACGGCACCACCTTCTACGCCGCAGGGCAGGAGATTACCGATGCGACCTACGCCGTCAAGTTCCACTGGCACGGCAAGATCATCCGCGTGCGCCCGAGCGGTGCAGGCGCGGACGAGACGTACTACCTGCGTGCCGAGTTGGAGAACGGCGAGACTTCCGGCTACGGTTCGGTGGACTGGTACGAAGCGCCCGGCGTGGAGTGCACCATCGACAACCTCGTGTCGCAGCTCTACATCTACAACGGTGTGGGCTACATCGCACGCAATGGTGCGGGCCTCACGTCTCTGGCTCCGGGCAGCGGCGAGCATCCGGCCTACGGTGCGCGGGTAGCAGGCGACGGTCTGACCTCGCCGATCCCGTGGTTCATCGACAAGCCGATCACGATGCTGTCCGTCTTCCAAGACCGGCTGGTCGTCGGCGCGCAGAACTACGTCAACGCCTCCCGCTCGGCGGACTACCTGAACTTCTGGCGCGGCTCGGCCGTCACCATCGAAGACAGCGACCCCATCGAAATCTTCGCGCACGGTAGCGAGGGCGATGTGCTGCGGCACGCGACGCTCTACAACGGCAACCTCGTGATCTTCGGTGACCGTCAGCAGTACGGCATCAGCGGCGACTCGGTGTTCAGTCCGAAGAACCCGCTGATTAAGTCGTTCAGTGCCAACAAGGATTCGGTGGACGCGAAGGCGCAGACCTCGGGCAACTACATCTTCTATGCGCAGTACGGCAGCGAAGGCACGAGCCTGCACCAGATGCGCGTTGGCGCGCTAAACGGGCAGCAGACGGTGACGGACGAAATGTCCAACGAGCTGGACTCGTGGCTGTCGGGCACCCCGTTGCAGATCACCCCGCTCACTGCACCGAACCTCGTCATGTTCCGCACGCGAGAGCACCCGCAGGACTTCTACCTGTACCGGTACGAGGACAACAAGAACAACGGGCAGCGCATCGTGGACGCATGGTCGAAGTTCCAGTACCACCCAGCGCTGGGCGAAATCATCGGCGTGAGCAGCTACAAGAAGAACGGCCTCGTGTTCACTGCACGCGGGTCGCTGGTGGCGTGCGACGTGTTCGACCCGAAGGGCGAGCCGGACTCGCATGCGTGCCTCGACAGCTGGGCGAGTTTTGGTACACCTACGGGCGTACAGACCGCGAGCGCGAGCATCGCCGTCAATAGCACTAGCCCGTACTTTCTGCTGGGCTGTCCCTACGCTCAGTCGTCTGACTTCCTTAGCCAGTTCGATGACCTCGATGCTGGTGCGTTGGAATACGGCGTGGTGTCCGAAGCTCTGGTGATCCCTACCAATCCGTTCCCTCGGGACCAGAACGGTCAGGCCGTACTCGACGGGCGCATGTCGCTCAACAAGGTGACGGTGGACGTGGAGAACACGGCAGGCATGATCGCCACGGTGGCAACCCGCAACAACGCGGTGACCACCACGGACTTCGAGGGCCGCATCCTCGGCGACTCCGACAACCTGATCGCGCGGCAACCGGTGTACCGGGGGCAGCTCAACATCAGCGTCGGGCGCGAAGTGCGCGAGTGCACCTACGAGATTCGCAGCAAGGCTTGGCTCCCGCTCCGGGTGACTGGCCTGAGCTGGACGGGTCAGACCTTTAATAACGTCAGGAGAGTAAGCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)