Protein

View in Explore
Genbank accession
YP_004324699.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARTVPGTGAVIEPIFDEVFGVRAVKVLNGGSGYVPTDPPRLTVTGCGTPDVEALLYPIIDADSGRITHVRVLNRGKGYDPLRLQIVPEQETPNVVTSFDINRLWQAHPNSPTTGTFTISGNDVTDRLRLVSDNHPKPTQHFLTERQPGGSTDVVDRSFDHTVVYRGGKDVPYVGTREFQKNKALGILANGSLLHSPEWGTVGGTPTNFSIDTVKYDYVKNTNVYDAVNDSGVYYYQSSKVVDEFDLTNGVFDWGNIQQYTWNVKVETGNLVVGVTGLDETLGNVEVGRIVDEVGGTGRGEIAKIVRDNQNNITRIYIRALTGDAFVANDLLLGSNGFEFRIDGDPISINPYYIDFGPDAAKFGPFVPGQFYFAPENIQVRANYLIRFNQSDASNQAGIGHPIRFSTTQDGTLNGGTLYYDSTGLSSAPSADYESIYSPLFLMNGDESSRIYFHCAYHRYMGGYAGDEAYMVLNTSAETYTPTNNYYVQDFYQSNSNDPNTIDRSRYIDGHSKVLGVSFDGYPIYGPWGYNSSGAVAREVSSYRLKTTAELSGARPQVNTASTVTYAVTISNGQFQFDGSRPSFLELDRGKTYIFNQNDASNDSQHLLISTTEDGWHGINPVVIGNTANLYTGNGIRYYIDGSEVTYASYLSGFNLATTREIRFTVPVNAPAALYLFAYTTAGHGIRTVQDGYILGDLTEDYIYDSSVGTLDEFNGKFAVTPEYPNGTYAYFMTEDGSGNPTYPYAIGPKMYGTPLFEGQTAPAPVTVFPSGAEGDVVLADNGSVSYIKMTKKGDNFFGPAKARILGGEGTGAIGTPTVQTVTGLALLNGGRSYATPPTLIFEGGGGQGAQGAAEIDTLGKVTSIAITNPGEFYQEPPFILITGGGGIGAKAEATIDQGVITAINITDPGVGYTSVPNVIFTKLVTLKRKTRARQAFNSSNIYLTGLVKSVGANDSEIYVDSTDAFPGSGQIILNYETITYTSKSVGKFGGLTRGVNFNYDQRVILDAGQNDSNGVSTYNFSVGDRVIRRVENANNKIAKVYDWNPATRELLVTFEVDELAFIDGGIPSTEDAIVQFDAGVASSAPSGFQPHTVLSTTGSSIFLLTDPPSTLADSSFQDILPTAAGDGIADLDNTGTDFANQISLDGGIYNSLYGIEETQGGTNTTLFQVGDNVKDGSIPQKFATIVTAGALSDGVEHTALLSIKLDANNANGQNYSVNEVVTGATSGVIGTVVSWDPATSTLVVGSIVPFNTGNVNVGVGGYLYEFSHDSTVVDVIIQNPGTNYTAAPTVAFENIGDIQATGTAVLTTAGDQVASITITNGGYGIKQTVDNTYNLHPTITFTNAGGDSTGANAAAQAILGGEDLVGNGGARYRIKSIDYQATVRS
Physico‐chemical
properties
protein length:1386 AA
molecular weight: 148050,67190 Da
isoelectric point:4,60267
aromaticity:0,10245
hydropathy:-0,20649

Domains

View on InterPro
Domain architecture
YP_004324699.1
1 1386 aa
STR 511–562 · STR 692–736 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_004324699.1
1 1386 aa
Domain Start End Length (AA) Confidence
N-terminal 1 111 111 0,9809
Central domain 112 939 829 0,3838
C-terminal 940 1386 446 0,0863
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Synechococcus phage S-SSM5 [NCBI] · taxon 445685
Uroviricota Caudoviricetes Pantevenvirales Glaucusvirus Glaucusvirus ssm5
Host
Synechococcus sp. WH 8102 [NCBI] · taxon 84588
Bacteria Cyanobacteria Oscillatoriophycideae Chroococcales Synechococcus

Coding sequence (CDS)

Genbank protein accession
YP_004324699.1 [NCBI]
Genbank nucleotide accession
NC_015289 [NCBI]
CDS location
range 76111 -> 80271
strand +
CDS
ATGGCAAGAACTGTTCCTGGAACTGGTGCTGTAATCGAACCAATATTTGACGAAGTATTTGGGGTTAGAGCGGTCAAAGTATTAAACGGAGGATCTGGATACGTCCCGACTGATCCTCCCAGACTTACTGTGACTGGTTGTGGAACACCTGACGTAGAAGCATTACTATATCCTATTATTGACGCCGATTCTGGACGAATCACTCATGTAAGAGTTTTGAATAGAGGAAAAGGATATGATCCTCTAAGATTGCAAATTGTTCCAGAGCAAGAAACACCAAATGTCGTCACATCATTTGACATTAACCGATTGTGGCAAGCGCACCCAAACTCTCCAACTACAGGTACGTTTACAATTTCTGGTAATGACGTTACAGATAGATTGAGACTGGTTAGTGATAATCATCCCAAACCAACTCAACATTTCTTGACTGAAAGACAACCAGGTGGTTCTACAGATGTTGTTGATAGAAGTTTTGATCACACTGTAGTTTATCGTGGTGGTAAAGATGTGCCGTATGTTGGCACAAGAGAATTTCAAAAAAATAAAGCACTTGGTATATTAGCAAATGGTTCTTTACTCCATAGTCCTGAGTGGGGAACTGTAGGCGGAACACCTACAAACTTTTCTATAGATACAGTAAAATATGATTATGTAAAAAATACAAATGTCTATGATGCTGTAAATGATAGTGGAGTTTATTATTATCAGTCAAGCAAAGTTGTAGATGAATTTGATCTTACTAATGGTGTATTTGATTGGGGTAATATTCAACAATACACTTGGAATGTAAAGGTAGAGACTGGAAACTTAGTTGTTGGTGTTACTGGATTAGATGAAACACTTGGTAATGTTGAAGTTGGTAGAATTGTTGATGAAGTAGGTGGAACTGGTAGGGGTGAGATTGCAAAAATTGTTAGAGATAATCAAAATAATATTACTAGGATTTACATCAGAGCATTAACAGGAGATGCCTTTGTAGCAAATGATCTTCTGTTAGGTTCTAATGGATTTGAATTTAGAATCGATGGTGATCCAATTTCAATTAATCCTTACTATATTGATTTTGGACCTGATGCAGCAAAGTTTGGACCCTTTGTGCCAGGTCAATTCTATTTTGCTCCCGAAAATATTCAAGTTAGAGCAAATTATTTAATTAGATTCAACCAATCTGATGCATCAAATCAGGCAGGTATTGGGCATCCTATCAGGTTCAGCACAACTCAAGATGGTACATTAAACGGTGGAACTTTATATTATGACAGCACGGGTTTAAGTTCAGCACCATCTGCTGATTATGAATCCATCTATTCCCCACTGTTCTTGATGAATGGTGATGAATCTAGTAGAATTTATTTCCATTGTGCATACCACAGATATATGGGTGGATATGCTGGTGATGAGGCATATATGGTGCTGAATACTTCAGCAGAAACTTATACTCCTACTAACAATTATTACGTTCAAGATTTTTATCAATCAAATAGTAACGATCCGAATACCATTGATCGTTCACGATATATTGATGGTCACTCAAAAGTTCTCGGTGTATCTTTTGATGGATATCCTATATACGGACCTTGGGGATACAATTCTAGTGGTGCTGTAGCAAGGGAAGTTTCTTCTTATAGATTAAAAACAACTGCTGAGTTATCTGGTGCTAGACCTCAAGTAAATACAGCATCTACAGTAACTTATGCTGTTACTATTTCTAACGGACAGTTTCAGTTTGATGGATCTCGTCCTTCGTTCTTAGAATTAGATCGTGGTAAAACGTACATTTTTAATCAAAATGATGCATCAAATGATAGTCAACATTTATTAATTTCTACCACAGAAGATGGTTGGCATGGTATCAATCCTGTTGTTATTGGTAATACTGCGAACTTATATACGGGAAATGGAATTCGATATTATATTGATGGTTCCGAAGTAACATATGCATCATATTTGTCAGGTTTTAACTTAGCAACAACTCGTGAGATTAGATTTACAGTTCCTGTAAATGCTCCTGCTGCTCTGTATTTGTTTGCATATACAACTGCTGGACATGGTATTAGAACTGTTCAGGATGGTTATATTTTAGGTGATCTTACCGAAGATTATATTTACGATTCTAGTGTTGGAACACTGGATGAATTTAATGGTAAGTTTGCTGTAACACCAGAATATCCAAACGGAACTTACGCTTATTTTATGACCGAAGATGGTAGTGGTAATCCTACTTATCCATATGCTATCGGTCCTAAAATGTATGGAACACCTTTATTTGAAGGACAAACCGCACCTGCCCCTGTAACTGTATTCCCATCAGGTGCAGAAGGTGATGTAGTTCTTGCTGATAATGGTAGTGTTTCATATATCAAGATGACTAAGAAGGGTGATAACTTCTTTGGTCCTGCAAAAGCAAGAATTCTTGGTGGTGAGGGAACTGGTGCTATAGGAACTCCTACTGTACAAACAGTTACTGGTTTAGCACTACTTAATGGTGGTAGAAGTTATGCAACTCCTCCTACTCTAATTTTTGAAGGTGGTGGTGGTCAGGGTGCTCAAGGTGCTGCTGAAATTGATACTTTAGGTAAAGTTACATCTATTGCGATTACAAATCCTGGTGAATTCTATCAAGAACCTCCATTCATTTTAATCACAGGTGGTGGCGGTATTGGTGCCAAGGCAGAAGCAACTATCGATCAAGGTGTTATAACAGCAATTAATATTACAGATCCTGGTGTTGGTTATACATCTGTTCCTAATGTTATCTTTACAAAATTAGTTACACTCAAACGTAAAACTAGAGCACGTCAGGCATTCAACTCATCAAACATCTATCTTACTGGTTTGGTTAAGAGTGTTGGAGCTAATGATTCTGAAATTTATGTAGATTCTACAGACGCATTTCCTGGCTCTGGTCAAATTATTCTTAATTATGAAACAATCACTTATACCTCTAAATCAGTAGGTAAGTTTGGTGGTTTGACAAGAGGTGTAAACTTTAATTATGATCAACGGGTTATTCTTGACGCAGGTCAAAATGATTCAAATGGTGTTTCAACATATAATTTCAGTGTTGGAGACAGAGTTATTCGTAGAGTTGAAAATGCAAACAATAAGATTGCAAAAGTATATGATTGGAACCCTGCGACTAGAGAACTTTTAGTTACTTTTGAAGTTGATGAACTGGCATTTATTGATGGTGGTATTCCTTCTACTGAAGATGCTATCGTACAGTTTGATGCTGGTGTTGCTTCTAGTGCTCCATCTGGATTCCAACCTCATACTGTTCTTAGCACGACTGGATCTTCTATCTTCTTATTGACAGATCCTCCTTCTACATTAGCGGATAGTTCTTTTCAGGATATCCTGCCAACAGCAGCTGGAGACGGTATTGCTGACCTAGATAATACTGGAACTGATTTTGCAAATCAGATTAGTCTTGATGGTGGTATCTATAATTCTTTATATGGTATTGAAGAGACACAAGGTGGAACAAACACCACATTATTCCAAGTTGGTGATAATGTAAAAGATGGTAGCATTCCTCAAAAGTTTGCAACTATTGTTACTGCAGGTGCTTTGAGTGATGGTGTTGAACATACAGCACTTTTAAGTATTAAACTTGATGCAAATAATGCTAATGGACAAAATTACAGTGTTAATGAAGTTGTTACAGGTGCAACTTCTGGTGTAATTGGAACAGTTGTTTCTTGGGATCCTGCAACATCAACACTAGTTGTTGGTAGTATTGTTCCATTTAATACTGGTAATGTCAACGTTGGTGTTGGTGGTTATCTTTATGAGTTCTCTCATGATAGCACCGTAGTTGATGTTATTATTCAAAATCCTGGCACAAACTACACTGCTGCCCCAACAGTAGCGTTTGAAAACATTGGTGACATACAGGCAACTGGAACTGCGGTTCTTACAACAGCAGGAGACCAAGTTGCTTCTATCACCATTACTAACGGTGGATATGGTATCAAACAAACTGTTGATAATACATATAACCTGCACCCAACCATTACCTTCACCAATGCTGGTGGAGATAGCACGGGTGCGAATGCCGCAGCACAGGCAATTTTAGGAGGCGAGGACCTCGTAGGCAACGGTGGTGCAAGATATAGAATCAAGAGTATCGACTATCAAGCAACTGTTCGCTCGTAA

Genome Context

Tertiary structure

YP_004324699.1
ESMFold structure
Source ESMFold
pLDDT 42.4
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8102-12 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank