Protein

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Genbank accession
WWO60419.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MAVPDPQLRYATDVFDANGVTTDWQISFTGGYIDPSHVYAMSGILDEETQLLTDRTSHTVEVLSEDENSSTVRVEPAVAAGRKLYIYRSTPVQQMLVDYVNGSIISKTNLNLSNDQLLKIIQEMFDSLNIATLSIDQQVGVVVDLNKIITEIYKEVLELLAAGGIVSVAPRVWSGSWTGDQADDTDFDMVGADVSGAGFYDVYVNGIGMQPDVDYQVTLADGTDPSFIRFATVPAEGSIWFAVLRGYAKPYTGPAPITATSLRVPIIPAEGPTYYADKATEYGLVRCTYAGGCTVNINLIPEVGDGETKLASGSYFSVQQKAGPVVITGDAGVTLEVPAGCIAATRGTNSVVTATCIDGDTNTWLLSGDLAKE
Physico‐chemical
properties
protein length:373 AA
molecular weight: 39844,22570 Da
isoelectric point:4,20236
aromaticity:0,08311
hydropathy:0,04879

Domains

Domains [InterPro]
DC_0914
STR
2–373
DC_0914
IPR005604
ATT
16–133
IPR005604
WWO60419.1
1 373
Architecture
STR
ATT
STR
STR 2-15 | ATT 16-133 | STR 134-373
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WWO60419.1
1 373
Domain Start End Length (AA) Confidence
N-terminal 1 258 258 0,9965
Central domain 259 362 105 0,0432
C-terminal 363 373 10 0,9933
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-258
Central
259-362
C-terminal
363-373

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage SB5
[NCBI] 		3117469 No lineage information
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WWO60419.1 [NCBI]
Genbank nucleotide accession
PP079417.1 [NCBI]
CDS location
range 35175 -> 36296
strand +
CDS
ATGGCAGTTCCCGATCCCCAGCTGCGCTACGCGACGGACGTATTCGACGCCAATGGCGTCACTACTGACTGGCAAATCAGCTTCACGGGCGGCTACATCGACCCGTCCCACGTGTACGCGATGAGCGGCATTCTGGACGAGGAAACGCAGCTGCTTACCGACCGGACCTCTCACACCGTAGAGGTGCTGTCCGAGGATGAAAACTCCTCGACCGTGCGAGTTGAGCCTGCCGTCGCGGCTGGGCGTAAGCTCTACATCTACCGCAGCACTCCGGTGCAGCAGATGCTCGTTGACTACGTTAACGGTAGCATCATCAGCAAGACCAACCTTAACCTCAGCAATGACCAGTTGCTGAAGATCATTCAGGAAATGTTCGATTCGCTGAACATCGCCACCCTTAGCATCGACCAGCAGGTCGGCGTGGTGGTAGACCTGAACAAGATCATCACCGAGATTTACAAGGAAGTCCTCGAACTTCTGGCCGCTGGTGGTATCGTGTCCGTAGCCCCTCGCGTCTGGTCCGGCTCTTGGACTGGCGATCAGGCGGACGACACCGACTTCGACATGGTGGGCGCGGATGTATCCGGCGCGGGCTTCTACGACGTGTACGTCAACGGTATCGGCATGCAGCCGGACGTGGACTATCAGGTCACGCTCGCTGACGGAACCGATCCCAGCTTCATCCGCTTCGCCACGGTTCCCGCCGAGGGAAGCATCTGGTTCGCCGTACTGCGCGGTTACGCCAAGCCCTACACCGGGCCTGCGCCGATCACCGCTACGAGCCTGCGGGTGCCGATCATCCCGGCAGAGGGTCCGACCTACTACGCCGACAAGGCTACCGAGTACGGACTCGTGCGCTGCACGTACGCCGGGGGCTGCACCGTCAACATCAACCTGATCCCCGAGGTCGGCGACGGTGAGACGAAGCTCGCCTCGGGGAGCTACTTCAGCGTGCAGCAGAAGGCAGGCCCGGTGGTCATCACCGGCGACGCGGGCGTAACTCTCGAAGTACCAGCCGGCTGCATCGCCGCAACTCGCGGCACCAACTCCGTCGTCACTGCAACGTGCATCGACGGCGACACCAACACATGGTTGCTCTCGGGCGACTTGGCTAAGGAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
60f3f1619f0390ce7d6a8c33c0a777f23de3f6cd8eaba96d1dcbdcfc2eaf7653
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8009
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel lytic viruses for Xanthomonas sp. and Stenotrophomonas maltophilia Petrzik,K., Brazdova,S., Sovova,L. and Neoralova,M. 2023-07-17 — GenBank