Phage RBP Database

UniProt accession

S5M6S2 [UniProt]

Protein name

Putative tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,94

Protein sequence

MSKSSYIGANVEVDSDTFTSFINKVNAVIADMSSTVVTAAPVAQANSTNGASTSGNAHVEGVLSAGVLVAPELRGGTMSVPATMVISTNTNPKANTSVSLGTDTARYTNVFMTNANTRNLFANTSQTNNLTVFTAANVNALDANTADITTLTSNSATITTIVNDTLTSNSATITTLSSNTFTSNSATIATADVGALTANTATVKTGTVTTLTSNSATITTLTSNTITVNTDLTVNRNLSIANNISANSLNVTKDVFIAGNLVVQGVTSLASDQALSVNTSIAEFLTVQQVALFNGNTTIGNAATDSLTITAKVASNIIPSGNTYSLGNTTNKFATAHITSMDSPTFTSVMNQTGAAPHYQLEETDTNTVGRVIVSGGQLYVQAGAANSGTTTSSGIIRFAGLNNADVSTLAVRSGGNWQSIYHQGNDGDGSGLDADLFEGQHGPYYLDAANFTGTLADARLPTSMAGKTFTSEVTATSIRLTSAGDITPTSTNHAFQIGLDSGVNVAINTNEIVCRNNGVFTSLMIPGGVTFDPAVTLSVDNGGTGANTAAGARTNLGLAAVAASGSATDLTTGTLNNARLPSSMTGKTFTSNTKISGMLTINHATSAELRLEMNGILSGRVYRDAGGGLVMRRYNSTTGAAEGYIQIVGNGADDLKYNGSTIWHDGNAALDIASVTGMSGAVMWFARNSAPAGFLKANGAAVSRTTYAALYAAIGTTFGAGDGSTTFNLPDLRGEFIRGWDDGRGIDVSRVFGSAQSANIQSHTHSIDPPSTTTTSDTHTHTWSGTTSSDAHTHTFSGTTNTTGAHTHKITTEDNTNLGSLVQSSAGGTDSTTNTGSAGDHSHTFSGTTSSESHTHTVSGTTSGDTHSHTVDIAAFTSGAAGSGTDTRPRNIALLACIKY

Physico‐chemical properties

protein length:	901 AA
molecular weight:	91994,52650 Da
isoelectric point:	5,39012
aromaticity:	0,05327
hydropathy:	-0,09545

Domain architecture

S5M6S2

1 901 aa

ATT 672–738 · STR 739–901

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR037053
ATT

IPR037053

SSF88874
STR

SSF88874

IPR011083
ATT

IPR011083

S5M6S2

1901 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1346
ATT

DC_1346 DC_1413

S5M6S2

1901 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR037053	ATT	IPR037053	672	734	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	680	901	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	681	738	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

S5M6S2

1 901 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	57	57	0,8930
Central domain	58	256	200	0,3753
C-terminal	257	901	644	0,9026

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Sinorhizobium phage phiM12 [NCBI] · taxon 1357423

Uroviricota Caudoviricetes Emdodecavirus

Host

Sinorhizobium meliloti [NCBI] · taxon 382

cellular organisms Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales

Genbank protein accession

AGR47756.1 [NCBI]

Genbank nucleotide accession

KF381361 [NCBI]

CDS location

range 50274 -> 52979
strand -

CDS

ATGTCCAAATCTTCTTACATCGGCGCAAATGTTGAAGTAGATAGCGATACCTTTACCTCGTTTATTAACAAGGTGAACGCTGTCATTGCGGACATGAGTTCGACTGTTGTTACAGCGGCTCCGGTTGCGCAAGCCAATTCCACCAATGGGGCCTCTACATCCGGCAACGCACACGTCGAAGGTGTGTTGTCGGCTGGCGTGCTTGTTGCTCCGGAACTTCGCGGCGGCACCATGAGTGTTCCCGCGACAATGGTCATTTCGACCAACACCAATCCGAAGGCAAACACATCGGTAAGTTTGGGCACGGATACCGCACGATACACGAACGTCTTCATGACGAACGCCAACACGCGCAATCTGTTTGCTAACACTTCTCAAACAAATAACCTTACGGTGTTTACAGCCGCCAACGTCAACGCATTGGATGCGAACACGGCGGACATCACTACACTGACTTCGAACTCGGCAACGATCACAACGATTGTCAACGACACCCTGACTTCGAATTCGGCAACGATCACAACGCTGTCTTCCAACACGTTCACATCGAACTCGGCAACCATTGCGACCGCCGATGTTGGGGCCTTGACGGCTAACACTGCTACGGTAAAAACCGGCACAGTGACGACACTGACTTCGAATTCGGCGACGATCACGACGCTGACTTCTAACACGATCACGGTCAATACAGATTTGACGGTCAACCGCAATCTGTCTATTGCCAACAACATCAGCGCCAACTCTCTGAATGTCACTAAAGACGTCTTTATTGCTGGCAATCTGGTGGTTCAAGGTGTTACCTCGCTGGCATCCGATCAGGCACTTTCGGTCAACACGTCCATCGCCGAATTCCTCACTGTTCAGCAAGTCGCGCTCTTTAACGGCAACACGACCATCGGCAATGCGGCAACCGATTCCTTGACGATCACCGCTAAGGTGGCGAGTAACATCATTCCGTCCGGCAACACATATTCGCTCGGTAACACAACGAATAAGTTTGCGACGGCACACATCACGTCGATGGACTCGCCGACATTTACTTCGGTGATGAACCAAACCGGCGCGGCTCCCCATTATCAGTTGGAAGAAACCGACACCAATACTGTTGGGCGGGTGATCGTATCGGGCGGTCAACTGTACGTTCAGGCTGGTGCCGCCAACTCTGGCACGACCACGAGTTCCGGCATCATTCGTTTTGCTGGTCTTAACAACGCGGACGTTAGCACCCTTGCGGTCCGTTCTGGTGGCAATTGGCAATCGATCTATCACCAAGGCAATGACGGCGACGGCTCCGGTCTTGATGCCGATCTTTTCGAAGGTCAACACGGTCCTTACTATTTGGACGCGGCTAACTTCACCGGTACGCTTGCGGATGCTCGGCTGCCGACGTCGATGGCGGGTAAGACGTTCACGAGCGAAGTTACGGCGACTTCGATCCGATTGACATCGGCGGGCGACATCACCCCAACATCCACCAACCACGCATTTCAAATTGGATTGGATTCCGGTGTCAACGTTGCCATTAACACCAATGAAATTGTATGTCGCAACAATGGTGTCTTTACATCGCTGATGATCCCCGGTGGTGTCACTTTTGACCCCGCAGTCACGCTTTCGGTTGATAATGGCGGTACTGGCGCGAATACGGCGGCTGGCGCACGCACAAACCTTGGTCTTGCTGCGGTTGCGGCTTCCGGCTCGGCAACTGATCTTACCACGGGTACACTGAACAACGCACGTCTTCCGTCTTCCATGACTGGTAAGACGTTCACTTCGAATACCAAAATCAGCGGTATGCTCACAATAAACCATGCCACGTCGGCAGAACTTCGTTTGGAAATGAATGGCATTCTTTCCGGGCGGGTTTATCGTGATGCTGGTGGTGGTCTCGTTATGCGTCGGTATAACTCCACAACCGGTGCTGCCGAAGGTTATATTCAAATCGTTGGCAATGGTGCCGATGATCTGAAATACAATGGTTCTACAATTTGGCATGACGGCAATGCCGCTCTTGATATCGCCAGCGTCACCGGTATGTCTGGTGCGGTCATGTGGTTTGCTCGAAACAGCGCTCCTGCCGGATTTTTGAAGGCAAACGGTGCGGCGGTTTCGCGTACGACCTATGCGGCGCTGTATGCGGCAATCGGTACGACGTTTGGTGCTGGTGACGGCTCCACGACGTTTAACCTTCCCGATCTTCGCGGCGAATTCATCCGTGGTTGGGATGATGGTCGCGGCATTGACGTTAGTCGTGTGTTTGGTTCGGCTCAAAGTGCGAACATTCAGAGCCACACTCACTCTATCGATCCGCCATCAACGACAACTACTTCTGACACTCACACGCACACGTGGTCTGGTACGACGTCGTCTGATGCTCATACTCACACGTTCAGTGGCACGACCAACACCACTGGTGCTCACACTCACAAGATCACGACAGAAGATAACACCAACCTTGGTAGTTTGGTCCAATCGTCTGCCGGTGGCACCGACAGTACCACCAACACTGGGAGTGCTGGTGATCACAGTCACACGTTCTCTGGTACGACGTCGTCTGAATCGCATACCCACACGGTTTCGGGTACGACGTCGGGCGACACCCATAGCCACACAGTTGACATTGCGGCGTTTACGTCTGGTGCTGCCGGTTCGGGCACGGACACCCGTCCGCGAAACATCGCGCTTTTGGCATGTATTAAATATTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)