Protein

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Genbank accession
YAA50835.1 [GenBank]
Protein name
tail assembly protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MANAYAYGGGLWSQLLPDIPAPVNVPLYDGGRDLVIAPTGAVRARLAPPTGKKGYGYDAFWEVFKNTLFVQPSAIDLGAILTSSTHSIRLWSTYESKITAASVTRVGTTGLELIGSTTNVALADHGGYEDYTMNVTMGVSGVLDAKFTWEFPGIPAALKTLSVTGTRVIVYDSPPQKRVTERLSWHTAVIKTMDSKEQRIRLKTYPTVEVTYRSLTNIKDSAKYEALIFGIGHGSLAVPVWHEAVRYVGELPIGTTTINIDTRGSNFLVGERLVLWSGMGQYETAEIASVSDTAVVLKSALLKAWESPIVAPMFYGNVDRSDFNKYKVAAVDSVVTYTRTTTELTVEAQPYPVFDSLPILTGNLHTFSKTSPVVISHDVTQLQLGFAPPKNVQQFTFPNVSRDVDVVLSSQREVRDFKKWLAYLGGKQRPFWYRSGRREIAVYGASLQDTDTLTIEDIGFSEHYLVSPTRKWIAVQKASDLTWQYYEVQSVTKVDPTVSSPALERLKLPSNLPYEHTPETVSMVCLMSPVRLDSDQVTIAWDNLNHAKCSLKVLEVSK
Physico‐chemical
properties
protein length:558 AA
molecular weight: 61683,52590 Da
isoelectric point:6,81354
aromaticity:0,09857
hydropathy:-0,10215

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAA50835.1
1 558
Domain Start End Length (AA) Confidence
N-terminal 1 27 27 0,8892
Central domain 28 226 200 0,0301
C-terminal 227 558 331 0,5257
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-27
Central
28-226
C-terminal
227-558

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Xw-1
[NCBI] 		3459118 Viruses >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAA50835.1 [NCBI]
Genbank nucleotide accession
PX096587 [NCBI]
CDS location
range 28650 -> 30326
strand +
CDS
ATGGCTAACGCATACGCATACGGGGGAGGGCTGTGGTCGCAGCTTCTCCCAGACATACCAGCACCAGTAAATGTACCACTTTACGATGGTGGCAGGGACTTAGTAATCGCGCCTACTGGGGCGGTGCGGGCACGGCTTGCTCCACCTACTGGCAAGAAGGGGTACGGCTACGACGCTTTCTGGGAAGTGTTCAAGAATACGCTGTTTGTCCAGCCTTCTGCGATAGACCTAGGCGCGATACTGACATCCAGTACACACAGTATCCGCCTCTGGTCCACGTACGAATCCAAGATCACGGCAGCGTCGGTAACTCGCGTGGGAACCACCGGGCTAGAGCTTATAGGTAGTACCACTAACGTTGCGTTGGCGGATCACGGGGGTTACGAGGACTACACTATGAACGTTACTATGGGTGTTTCTGGAGTACTAGACGCTAAGTTCACGTGGGAGTTTCCGGGAATACCAGCGGCACTGAAGACACTTAGCGTAACTGGTACACGTGTTATCGTTTACGACTCGCCACCGCAGAAGCGCGTAACCGAACGACTTTCATGGCATACTGCCGTTATTAAGACTATGGATTCGAAAGAGCAACGTATACGCCTTAAGACGTATCCTACAGTCGAAGTTACTTATCGGTCTCTTACTAATATTAAAGATTCCGCTAAGTACGAGGCGCTAATCTTTGGCATAGGGCATGGGTCTCTTGCGGTCCCAGTATGGCATGAGGCGGTGCGGTATGTTGGGGAGCTGCCTATCGGCACTACGACAATTAACATCGACACACGTGGTAGTAACTTCTTAGTAGGAGAGCGTCTGGTGTTGTGGTCAGGTATGGGGCAGTACGAGACAGCCGAGATAGCCTCGGTATCGGACACTGCTGTAGTCTTAAAGTCGGCATTACTAAAAGCGTGGGAGTCACCTATAGTGGCACCTATGTTCTATGGCAATGTTGATCGCAGTGACTTCAATAAGTACAAGGTAGCTGCGGTAGACAGTGTTGTGACTTACACCAGAACTACTACAGAGTTGACGGTAGAAGCCCAGCCGTACCCGGTATTCGACAGCCTGCCAATCCTAACTGGAAATCTACATACATTTAGTAAGACTAGCCCTGTGGTTATATCTCATGATGTAACACAGCTACAGCTTGGCTTCGCGCCACCCAAAAACGTGCAGCAGTTTACGTTCCCAAATGTTAGCCGCGACGTGGATGTGGTGCTCAGCAGTCAGCGTGAAGTACGGGACTTTAAGAAGTGGCTGGCTTACCTTGGGGGTAAGCAGAGACCATTCTGGTACAGGTCTGGACGTAGGGAGATCGCCGTCTACGGTGCGTCTCTGCAAGATACTGACACGCTTACTATTGAGGACATCGGATTCTCAGAGCACTACTTAGTATCGCCAACACGTAAGTGGATCGCAGTGCAGAAGGCATCCGACCTAACGTGGCAGTACTACGAGGTTCAGAGTGTTACTAAGGTAGACCCTACAGTAAGCTCACCAGCACTGGAGCGCCTTAAACTACCTAGTAACCTACCTTATGAGCATACACCGGAGACAGTTAGCATGGTATGCTTAATGTCCCCGGTACGTCTGGACTCAGACCAAGTTACTATTGCGTGGGACAACCTTAACCACGCTAAGTGCTCACTAAAAGTTCTGGAGGTTAGTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1ccd77062d50feb97778474cdfa0a198e270ff8e4e02d5d80a88b451b5277687
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7250
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50