Phage RBP Database

Genbank accession

XAN63925.1 [GenBank]

Protein name

long tail fiber protein distal subunit

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,83

TF

Evidence RBPdetect2

Probability 0,50

Seq2Symm

C3 confidence 0,999 truncated

C3	0,999
C1	0,007
C6	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MATLKQIQFKRSKTAGARPAASVLAEGELAINLKDRTIFTKDDLGNIIDLGFAKGGQVDGNVTIDGTLRVNGPINNFGNFSTSGTITASNIVSATVFRSTSGSFYTRAINDTANAHLWFENTNGSERGVLYSKPQSENEGVITMRVRQGTAAGAQNSEFHFISTDGGIFQAHKLTALTSISTPTISVNLINHDSKAFGQYDSQSLVNYVYPGTGETNGVNYLRKVRAKSGGTIWHEICTAQTGQADEVSWWTGSTPVSKQCGIRNDGRMIVRNSLALGTMTTDFPSSDYGNGGALGFGAYLALGDNGTGLRYQKTGVYDLVGSGSSVASVTPDSFRSTLKGIFGRSEDQGTTWIMPGTNAAFLSVQTQADENTAGDGQTHIGYNSGGKMNHYFRGKGKTNINTQEGMEVNPGILKLVTGANNVMFYADGGITSVKQLSIYNGIYLAANNSTAGLTFAPTTTVDGTKQILWEGGKRAGQNKNPVTVKVWGDSFDASGDRNRETVFEVADEQGYYFYAQRTNPASGQTVGPVNFKFNGTVETGHIIGLGNISASGTVSSSRFEALGDIAFKNANNRHIRFEYVNSGGATAVDGYIFKDGPSATNRRPGIRINCAAPNSSTSSGDFVFNEDGNLTVPVQVQPGNFGNFDSRYPKLFQLGANVNLDTLTGDNQLGEWAQHANANTSLALNYPEAQAGHLTVTAGAGVQQTYRVYNSSRVYLRSKYSTSAWTPWDRVVTEYYLKSGIPSQFVSKNSDGFRIAYGDYGFFIRNDGSNTYFMLTNSGDQMGPWNGLRPLAINNSNGNVTMSHSLTVGGSSSFSSALTVGNGLTVNGASGINVTSTAGDAISWGDAGARLANDGNLKGTRWASFGGALWLGDALDWVHGQNVSKSGDTMTGTLTLNNGQLVLNGGSGNIGFTKAGANPRSMRIFHAGDGTRGNRIEIADETNYIAYFQKLPGGQNQVSFNSATLSGLTQCNQFGVNTTNALGGNSITFGDNDTGIKQNGDGLLDIYANGVQTFRFQNGDLYSYKNINAPNVYIRSDIRLKSNFKPIENALDKVEKLNGIIYDKAEYIGGEAIETEAGIVAQTLQDVLPEAVRETEDSKGNKILTVSSQAQIALLVEAVKTLSSRVKELESKLM

Physico‐chemical properties

protein length:	1135 AA
molecular weight:	121130,48390 Da
isoelectric point:	6,57169
aromaticity:	0,09163
hydropathy:	-0,35392

Domain architecture

XAN63925.1

1 1135 aa

STR 654–732 · ATT 744–794 · CHP 1037–1134 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

cd19958
STR

cd19958 IPR048390 IPR030392

IPR030392
CHP

IPR030392 Coil

XAN63925.1

11135 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1954
STR

DC_1954

XAN63925.1

11135 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
cd19958	STR	DC_0464	654	732	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
IPR048390	ATT	DC_0836	744	794	InterPro cluster	Long-tail fiber proximal subunit, trimerization domain	C-terminal	Medium	Text match	656 proteins / 656 hits
IPR030392	CHP	DC_0088	1037	1134	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	1037	1094	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
Coil	Unmapped	-	1113	1133	Coils	Coil	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XAN63925.1

1 1135 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	48	48	0,7861
Central domain	49	247	200	0,1961
C-terminal	248	1135	887	0,7509

Note: Constraints were applied during segmentation.
Fixed 322 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage F13076 [NCBI] · taxon 3143138

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella enterica [NCBI] · taxon 28901

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XAN63925.1 [NCBI]

Genbank nucleotide accession

PP738980 [NCBI]

CDS location

range 120716 -> 124123
strand -

CDS

ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAACCGCAGGTGCACGTCCTGCTGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGATAGAACAATTTTTACTAAAGATGATTTAGGAAATATCATTGATCTGGGTTTTGCTAAAGGCGGGCAAGTTGATGGAAATGTAACTATTGATGGAACTTTACGCGTCAATGGACCAATAAACAACTTTGGAAATTTTTCTACAAGTGGCACTATCACGGCAAGTAATATTGTTTCTGCTACAGTATTCAGATCAACATCCGGTTCATTTTATACAAGAGCAATAAATGATACAGCAAATGCCCATCTTTGGTTTGAAAATACGAATGGGTCGGAAAGAGGGGTTTTATACTCAAAACCACAGTCTGAAAATGAAGGCGTAATTACAATGCGTGTTCGCCAAGGAACCGCAGCGGGGGCTCAAAATTCAGAATTTCATTTCATTTCTACTGATGGTGGTATCTTCCAGGCACACAAATTAACTGCTTTAACTTCTATTAGTACACCAACTATTAGTGTTAATTTAATTAATCATGATTCTAAAGCCTTTGGACAATATGATTCTCAATCTTTAGTCAACTATGTTTATCCTGGAACCGGTGAAACTAACGGAGTAAACTATCTTCGTAAAGTGCGTGCTAAATCTGGCGGCACTATATGGCATGAAATCTGTACGGCCCAAACAGGTCAGGCTGATGAGGTTTCTTGGTGGACTGGTAGTACTCCAGTATCTAAACAATGCGGTATTCGTAATGACGGGCGAATGATTGTTCGTAATAGTCTTGCACTTGGCACAATGACTACTGATTTTCCGTCAAGTGATTATGGTAATGGAGGTGCTTTAGGATTTGGCGCTTATTTAGCTCTAGGTGATAACGGCACAGGTTTACGTTATCAAAAAACCGGTGTTTATGATTTAGTCGGTTCTGGATCATCTGTTGCATCTGTTACTCCAGATAGTTTCCGTAGTACTCTTAAAGGTATATTTGGTCGTTCAGAAGACCAAGGCACCACATGGATTATGCCTGGCACTAATGCCGCTTTCTTGTCTGTTCAAACACAAGCTGATGAAAACACTGCTGGAGACGGCCAGACACATATTGGCTATAACTCAGGCGGTAAAATGAACCACTATTTCCGTGGTAAAGGCAAAACTAATATTAATACTCAAGAAGGCATGGAAGTTAACCCGGGTATTCTTAAACTAGTAACCGGTGCAAATAATGTAATGTTTTATGCTGATGGCGGTATTACATCTGTTAAGCAGCTTTCAATATATAACGGCATATATTTAGCAGCTAATAATTCTACTGCTGGGCTAACATTCGCTCCAACTACTACAGTTGATGGCACTAAGCAAATTTTGTGGGAAGGTGGTAAGCGCGCTGGTCAAAACAAAAACCCTGTTACAGTTAAAGTGTGGGGTGATTCATTTGACGCATCCGGTGATCGTAATCGTGAAACCGTTTTTGAAGTAGCTGATGAGCAAGGTTATTATTTCTACGCTCAACGTACTAATCCTGCATCAGGTCAAACAGTAGGTCCGGTTAACTTTAAATTTAACGGAACTGTCGAAACAGGCCATATCATAGGCCTTGGTAATATAAGTGCCTCCGGCACAGTATCATCTTCAAGATTTGAGGCTCTTGGCGATATAGCATTTAAAAATGCTAACAACCGCCATATTCGTTTCGAATATGTTAATAGTGGCGGAGCAACTGCTGTAGATGGTTATATCTTCAAAGATGGCCCTTCGGCTACAAACCGTCGTCCTGGTATTCGTATTAACTGTGCTGCTCCTAATTCTTCTACTAGTTCTGGTGATTTCGTCTTTAATGAAGACGGGAACCTTACGGTTCCCGTTCAAGTACAACCAGGTAATTTCGGCAACTTTGATTCACGTTATCCGAAGTTGTTCCAATTAGGCGCAAATGTAAACCTTGATACTTTAACAGGTGATAATCAGCTTGGCGAATGGGCCCAGCATGCAAATGCAAATACATCGTTAGCTTTGAATTATCCTGAAGCTCAAGCGGGCCATTTAACAGTTACCGCTGGTGCAGGTGTTCAACAAACTTATCGCGTTTATAATTCAAGTCGTGTATACTTACGTTCAAAATATAGCACGAGTGCTTGGACTCCTTGGGACCGGGTTGTAACAGAATATTATTTGAAATCTGGAATTCCTTCTCAATTCGTATCTAAAAACTCTGATGGATTCCGTATTGCATATGGTGACTACGGGTTCTTTATCCGTAATGATGGCAGCAATACTTATTTCATGTTGACCAACTCTGGTGACCAAATGGGCCCATGGAACGGCCTTCGTCCGCTGGCTATTAATAACTCTAATGGCAACGTAACAATGAGTCATTCATTGACCGTTGGTGGTTCTTCATCATTTAGTAGTGCTTTAACAGTAGGTAATGGATTGACTGTTAACGGCGCCTCAGGTATTAACGTTACTAGTACTGCTGGTGATGCTATTTCTTGGGGTGACGCCGGCGCTCGTTTAGCAAATGACGGTAACTTAAAAGGAACACGTTGGGCTTCATTTGGCGGGGCGTTATGGCTTGGTGATGCTTTAGATTGGGTTCACGGTCAAAACGTTTCTAAGTCTGGCGACACTATGACAGGTACATTAACCTTAAATAACGGTCAACTTGTACTTAATGGTGGCTCAGGTAATATTGGTTTTACTAAAGCAGGTGCCAACCCGCGCAGTATGCGTATATTCCATGCTGGCGATGGAACTCGTGGTAACCGTATTGAAATTGCCGATGAAACTAACTATATTGCTTATTTTCAAAAATTACCTGGTGGTCAAAACCAAGTTTCATTCAATAGCGCTACACTTTCTGGATTAACACAGTGTAATCAGTTTGGCGTTAATACAACAAACGCACTTGGTGGAAACAGTATAACATTTGGTGATAATGACACTGGTATTAAGCAAAATGGTGATGGATTATTAGACATATATGCGAACGGCGTGCAAACTTTCCGTTTCCAAAACGGCGATTTGTACTCATACAAAAATATAAATGCTCCAAACGTTTATATTCGTTCTGATATTCGTTTAAAATCCAACTTTAAACCTATCGAAAATGCACTTGATAAAGTTGAAAAACTTAACGGTATCATTTACGATAAAGCTGAATACATCGGTGGAGAGGCAATTGAAACTGAAGCGGGTATTGTGGCTCAAACGTTGCAAGACGTTTTACCAGAAGCCGTCCGTGAAACAGAAGATAGCAAGGGTAATAAAATACTCACTGTTTCTTCTCAAGCCCAGATTGCTCTTCTAGTTGAAGCTGTGAAAACACTTTCTTCTCGTGTAAAAGAACTTGAATCTAAACTTATGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)