Protein

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Genbank accession
YP_009600038.1 [GenBank]
Protein name
regulator of chromosome condensation
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFPIISSTPILEKLVITKIAAGQEHFLFLTSTGDVYGIGKNTYGQLGTGNTITQTDYVKVFSGARDIFCGERISFVIRDSDSAIMATGAVNSTGFSGNISTWQARTNLNVVAAKGVKKICASEKICAILCNDNTLYTVGSGYLGNGVYTSGLQSSLQNVANNAYDISVSTESMYYRDNNQNIYGVGEYWALNLPLTANNQATWASQYGGVYGDMFNPELKTHYRSCLIPGSDRTYAVGLSSFGQLGNNNIADMQGNRVYPITFYLVGKPLFFGSSRGAAYMTMIATADGIYYSGRNTNGNVGFPGAGSAFGTYRQISLSNVIGPSTFDATLIQSLESNQYCTYLLYNNKVFITGLAFDGTSSTSLVPVNIKG
Physico‐chemical
properties
protein length:374 AA
molecular weight: 40207,73610 Da
isoelectric point:7,51061
aromaticity:0,11765
hydropathy:-0,01845

Domains

Domains [InterPro]
IPR009091
STR
6–374
IPR009091
IPR009091
STR
11–306
IPR009091
IPR051553
Unmapped
14–252
IPR051553
PF13540
STR
18–47
PF13540 IPR000408
IPR009091
STR
20–374
IPR009091
IPR000408
STR
21–37
IPR000408 IPR000408
YP_009600038.1
1 374
Architecture
STR
STR 6-374
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009600038.1
1 374
Domain Start End Length (AA) Confidence
N-terminal 1 44 44 0,2592
Central domain 45 273 230 0,8073
C-terminal 274 374 100 0,3678
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-44
Central
45-273
C-terminal
274-374

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage BF
[NCBI] 		1962671 Uroviricota > Caudoviricetes > Eneladusvirus >
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009600038.1 [NCBI]
Genbank nucleotide accession
NC_041917 [NCBI]
CDS location
range 349296 -> 350420
strand -
CDS
ATGTTACCATTTCCAATAATAAGTTCAACACCTATTTTAGAAAAATTAGTAATTACTAAAATTGCTGCTGGACAAGAACACTTCTTGTTCTTAACATCTACTGGTGATGTATATGGTATAGGAAAAAATACATATGGTCAACTTGGTACTGGAAATACAATAACACAAACAGATTATGTTAAAGTTTTTTCTGGTGCTAGAGATATATTTTGTGGAGAAAGAATATCATTTGTTATTCGAGATTCGGATTCAGCAATAATGGCAACTGGTGCAGTTAATAGTACCGGTTTTAGTGGAAATATATCTACATGGCAAGCTCGTACAAATTTAAATGTTGTAGCTGCTAAGGGGGTTAAAAAAATCTGTGCATCGGAAAAAATCTGTGCAATACTATGCAATGACAACACGTTATATACGGTAGGTAGTGGGTATCTAGGTAATGGAGTTTACACATCTGGTTTACAATCATCATTACAAAACGTTGCAAACAACGCATATGATATATCTGTTAGTACTGAAAGTATGTATTACAGAGATAATAATCAAAATATATATGGAGTTGGTGAGTATTGGGCATTGAACTTACCTTTAACTGCAAATAATCAAGCAACATGGGCTTCACAATACGGTGGTGTATATGGAGATATGTTTAACCCTGAACTTAAAACTCATTACAGATCATGTTTAATTCCTGGTTCAGACAGAACATATGCTGTTGGTTTATCATCTTTTGGTCAATTAGGGAATAATAATATTGCTGACATGCAAGGAAATAGAGTATATCCTATAACATTTTATTTGGTAGGAAAGCCTTTATTTTTTGGTAGTTCTCGTGGAGCAGCATATATGACTATGATTGCTACTGCTGATGGAATATATTATTCTGGAAGAAATACAAATGGTAATGTTGGTTTTCCTGGTGCAGGATCTGCATTTGGAACATATAGGCAAATATCATTATCAAATGTTATTGGTCCTTCCACATTTGATGCAACATTAATACAATCATTGGAGTCTAATCAATATTGTACATATTTGCTATACAATAATAAAGTTTTCATAACTGGTCTAGCATTTGATGGTACTAGTAGTACTTCATTAGTACCAGTTAATATAAAAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9e24172e8eccd8fcc485ef930fa212da7ac6433661e1dbe5823da29bc4d19f43
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8383
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Serratia marcescens phage BF Casey,E., Fitzgerald,B., Mahony,J., Lugli,G., Ventura,M. and van Sinderen,D. — — GenBank