Protein

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Genbank accession
AFD02868.1 [GenBank]
Protein name
structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MAKQGLLASAKPGATTNTVLYKAPIDASASTVLSVSAQGGSNTSFDVGIKDYDQHVVLDASTYKLHTGDVFTGYRFNLGTAVGADQGLNVNQALSSADNEKTAVFESFYIPPFTEIVVKSKAIRSIAVESVTGTFAIGNTISKGAGSNTSVATIFAVASGSGGSTLYIGPSTLNGSGSEFVAGDSITASGGATGTISSGGVGTAANEFTFTTSGGTEDLYLGTALTVLGDRTYRFNVADSSMSSLAFKLSETANGEWGPDGTAGNSDDGTEYATGKTTNGTAGSSGAYVQYDLTANTSFPSSLYYYEGTTGTAANANFGGTDRLLTTSGSYSYDSIFVYNVSGTWVDNTDTFTYNGVTYTVSSQTAGPYGFVRDYTGTALYVVLGEGSANISGSDTFLDNPVLTTGARSTVTVSSVTSSGATLETKHYLRKDNAITANTTEEIKSLVIGPGQTLVVENNDADCSFTLVGFEDSSAGFTTRAYAQTAGTSGSGGGS
Physico‐chemical
properties
protein length:495 AA
molecular weight: 50495,15270 Da
isoelectric point:4,37327
aromaticity:0,09697
hydropathy:-0,10061

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage metaG-MbCM1
[NCBI] 		1079999 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus
[NCBI] 		1129 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFD02868.1 [NCBI]
Genbank nucleotide accession
JN371769 [NCBI]
CDS location
range 20386 -> 21873
strand +
CDS
ATGGCTAAACAAGGACTACTTGCCTCAGCAAAACCAGGTGCGACTACCAATACGGTGCTCTATAAAGCACCTATCGATGCGTCTGCAAGTACGGTTTTGTCTGTGAGTGCACAAGGTGGATCAAACACCTCATTCGATGTCGGTATCAAAGACTACGATCAACATGTCGTCTTAGATGCTTCAACTTACAAACTACACACTGGTGACGTATTCACTGGTTATAGATTTAACTTAGGTACAGCAGTTGGTGCTGACCAAGGTCTTAACGTCAATCAAGCATTATCTTCTGCTGATAATGAAAAAACAGCAGTATTTGAATCATTTTATATTCCTCCCTTCACCGAGATTGTAGTGAAGAGTAAGGCAATTAGATCGATTGCAGTTGAATCTGTGACTGGTACGTTTGCTATTGGTAATACTATTTCAAAGGGGGCAGGTAGTAACACATCTGTTGCAACAATTTTTGCTGTAGCATCTGGTTCTGGTGGTTCAACTCTTTATATCGGTCCTTCTACCTTGAATGGTTCTGGATCTGAATTTGTTGCAGGTGATTCCATTACTGCATCTGGTGGTGCTACTGGTACTATTTCATCTGGTGGTGTTGGTACTGCTGCAAACGAGTTTACCTTTACAACATCTGGTGGAACTGAGGATCTTTATCTAGGAACTGCTTTAACAGTATTAGGTGATAGAACATATCGCTTTAACGTAGCAGACTCAAGTATGAGTAGTTTGGCATTCAAACTCTCTGAGACTGCAAACGGTGAGTGGGGTCCTGACGGAACTGCAGGTAACTCTGATGATGGTACTGAGTATGCTACAGGTAAGACCACTAACGGAACTGCAGGTTCTAGTGGTGCTTATGTTCAGTACGATCTAACTGCAAACACAAGTTTCCCCTCTTCTCTATATTACTATGAAGGAACAACTGGAACTGCTGCTAACGCAAACTTTGGAGGAACCGACAGGTTGCTCACTACGTCGGGTTCATATAGCTATGACTCTATTTTCGTATACAATGTTTCTGGGACCTGGGTAGACAACACAGATACCTTTACATACAACGGTGTAACTTATACTGTTAGCAGTCAGACTGCAGGTCCTTACGGATTTGTTCGTGACTACACAGGAACTGCTCTATATGTTGTTCTTGGAGAAGGTTCTGCGAACATCTCTGGTTCGGATACTTTCTTAGATAATCCTGTCTTAACAACTGGTGCTCGTTCTACTGTGACAGTTTCTTCTGTTACTTCTTCGGGTGCAACTTTAGAGACTAAGCATTACCTTCGTAAGGATAATGCTATCACTGCGAATACTACAGAAGAGATCAAATCTCTTGTTATTGGACCAGGGCAAACACTGGTCGTTGAGAACAATGACGCAGATTGTTCGTTTACATTAGTTGGTTTTGAAGACAGTTCTGCTGGATTCACTACTCGTGCTTATGCTCAAACTGCAGGAACTTCTGGTTCTGGCGGTGGAAGTTAA

Tertiary structure

PDB ID
fef9ab32beaa425f645d23af8d6ef1fb248cdcdce4f249bbf9ff30feaf54f248
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4786
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Viral Tagging: a high-throughput approach to explore virus-host interactions Deng,L., Sullivan,M.B., Poulos,B. and Ignacio Espinoza,J.C. 2019-08-05 — GenBank