Phage RBP Database

Genbank accession

YP_008241376.1 [GenBank]

Protein name

virion structural protein

RBP type

TF

Evidence RBPdetect

Probability 0,83

TF

Evidence RBPdetect2

Probability 0,40

Seq2Symm

C3 confidence 0,953

C3	0,953
C1	0,035
I	0,019

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MPQEVVAQFDRKFNNPIETNRAVETIGQRDSIPTLTRWEGMLCYVESEDTTYQLTGVIDNTGWQALVGLSDAPEDGQQYARKDGAWVLAYTQEYSSYDKSYAVTIAGSASPAPTSHTTTATVNVKEYVDRYIVKGTLQLSYATLTGLNFNKFILSIITDLDWEYFPNDTVPGTYFDTSIIGNLNIIAGTSKILSLQGTFMVQDDRASSSNVYVQFNRTMYKF

Physico‐chemical properties

protein length:	222 AA
molecular weight:	24853,39300 Da
isoelectric point:	4,55669
aromaticity:	0,12162
hydropathy:	-0,28694

Domain architecture

YP_008241376.1

1 222 aa

ATT 65–90 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

SSF58046
ATT

SSF58046

G3DSA:6.20.230.10
ATT

G3DSA:6.20.230.10

YP_008241376.1

1222 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0772
STR

DC_0772

YP_008241376.1

1222 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
SSF58046	ATT	SSF58046	65	89	Merged direct domain	SSF58046	N-terminal	Low	Positional only	12 proteins / 12 hits
G3DSA:6.20.230.10	ATT	G3DSA:6.20.230.10	68	90	Merged direct domain	G3DSA:6.20.230.10	N-terminal	Low	Positional only	46 proteins / 46 hits

Proteins with similar domain architecture

Phage

Cellulophaga phage phi17:1 [NCBI] · taxon 1327980

Uroviricota Caudoviricetes Helsingorvirus

Host

Cellulophaga baltica [NCBI] · taxon 76594

cellular organisms Bacteria Pseudomonadati FCB group Bacteroidota/Chlorobiota group Bacteroidota

Genbank protein accession

YP_008241376.1 [NCBI]

Genbank nucleotide accession

NC_021795 [NCBI]

CDS location

range 34939 -> 35607
strand +

CDS

ATGCCACAAGAAGTAGTCGCACAATTTGACAGAAAATTTAACAACCCTATTGAGACTAATAGGGCTGTTGAGACGATAGGACAAAGAGACTCAATCCCAACTCTAACAAGATGGGAGGGCATGCTTTGCTATGTAGAGTCTGAGGATACGACATATCAATTAACAGGAGTTATTGATAATACAGGATGGCAGGCCCTTGTAGGTTTGTCAGATGCCCCTGAGGATGGGCAACAATACGCCCGCAAAGATGGGGCCTGGGTTTTAGCTTATACTCAAGAATACTCATCTTATGATAAGAGTTATGCTGTCACTATAGCAGGGAGTGCAAGTCCGGCTCCTACATCACACACAACAACAGCTACGGTAAATGTAAAGGAGTACGTGGATAGGTATATCGTAAAAGGAACTTTACAGCTATCTTATGCAACCTTAACTGGGCTTAATTTTAATAAATTTATATTAAGCATAATTACGGATTTAGACTGGGAGTATTTCCCTAATGATACAGTGCCTGGGACTTATTTTGATACATCTATTATAGGTAATTTAAACATAATTGCAGGAACATCAAAAATACTTAGTCTGCAGGGGACATTTATGGTGCAAGATGATAGGGCGTCATCAAGTAACGTTTATGTACAATTTAATAGGACAATGTATAAATTTTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)