Phage RBP Database

Genbank accession

YP_004934724.1 [GenBank]

Protein name

hypothetical protein

RBP type

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,78

Protein sequence

MLGWSESGPPAPIPESVLGWFDVPQLTSSEDLYLQDEGFLSWLDNNQTMFGDLGLNKLSITNSDRLHFGDEAVVKIPQSVDDRLVSQDQGAFRFPGEGFTQYGDTGMLLPRSTGSDTVAFADGDSSRLKLESGASLAYQSEGDIAFTPRTETYTQITVTGSVQQYRVPAWCNFLDIIGLSAGASGQTGHGGNGNAGKGGKAGSWDYAMRERGRSNFPSTLIILSVTIGAGGSQPANSDLAGPNAGGATIVTSPETGTILNIPGGSGTAGGQNGESPGGLTVNGVSYTGGAGGTGNGGNATAPGGAGAGGNGGFFTSRTRGGVGSAGRVWIRAYQ

Physico‐chemical properties

protein length:	334 AA
molecular weight:	34018,76460 Da
isoelectric point:	4,59506
aromaticity:	0,08084
hydropathy:	-0,29521

Domain architecture

YP_004934724.1

1 334 aa

STR 159–333 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR049304
STR

IPR049304

YP_004934724.1

1334 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1790
STR

DC_1790

YP_004934724.1

1334 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR049304	STR	DC_0631	159	333	InterPro cluster	Glycine-rich domain	C-terminal	Low	Positional only	225 proteins / 228 hits

Proteins with similar domain architecture

Phage

Gordonia phage GTE7 [NCBI] · taxon 1100814

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Gordonia terrae [NCBI] · taxon 2055

cellular organisms Bacteria Bacillati Actinomycetota Actinomycetes Mycobacteriales

Genbank protein accession

YP_004934724.1 [NCBI]

Genbank nucleotide accession

NC_016166 [NCBI]

CDS location

range 30698 -> 31702
strand +

CDS

ATGCTAGGCTGGAGCGAGTCTGGACCCCCAGCGCCGATCCCAGAATCGGTGCTGGGGTGGTTTGACGTGCCCCAGCTTACTTCATCCGAAGACCTATACCTTCAGGACGAGGGCTTCCTCTCCTGGCTGGACAATAATCAGACAATGTTCGGTGATCTTGGATTGAATAAGTTGTCCATAACTAATTCAGATCGCCTACACTTCGGCGACGAGGCAGTTGTAAAGATTCCACAGTCCGTGGATGATCGACTTGTTTCCCAGGACCAAGGTGCATTCAGATTCCCGGGTGAAGGATTTACCCAGTATGGCGATACTGGAATGCTTCTGCCGAGATCGACAGGCAGCGACACTGTCGCGTTCGCTGACGGGGATTCGTCTAGACTGAAGCTCGAGTCTGGGGCCTCGCTAGCTTACCAGAGTGAGGGCGACATAGCCTTTACTCCACGGACTGAAACCTACACGCAGATAACAGTGACCGGCTCCGTCCAGCAGTACAGGGTGCCAGCCTGGTGCAACTTTTTGGACATCATAGGACTGAGTGCTGGCGCGTCCGGCCAGACTGGTCACGGCGGTAACGGAAATGCAGGCAAGGGAGGAAAAGCTGGCTCGTGGGATTACGCGATGCGCGAGCGCGGCAGGTCCAACTTCCCGTCTACGCTTATCATCCTCAGCGTTACGATCGGCGCGGGTGGATCACAGCCTGCCAACTCGGACCTCGCTGGACCTAATGCAGGTGGCGCAACCATCGTGACCTCGCCAGAAACCGGAACAATACTGAACATTCCAGGCGGCTCCGGCACGGCTGGCGGACAGAACGGCGAGTCTCCGGGCGGCCTTACTGTTAACGGCGTGTCATACACAGGAGGAGCCGGAGGCACGGGAAACGGAGGCAACGCAACCGCCCCCGGCGGGGCTGGGGCAGGCGGAAACGGCGGCTTCTTTACCTCGAGAACTAGAGGTGGAGTTGGCTCTGCCGGTCGAGTGTGGATAAGGGCGTACCAGTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)