Protein

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Genbank accession
AFD03008.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKKILPLVMLLMAGSAAHAGGIVSKHQSSLQHTVEAGYNSYTRVGNAFSISGTNVTTSHTPSGGSAVSGGIGINSYSATTGVASVGEISATQTGSGSFNFSQSFTAGDAAGSGTDEALFGNQVQNSGGTAGSAAVGTVTNAHAVTLTGGGLAGTTTTGQFVSEISVFD
Physico‐chemical
properties
protein length:168 AA
molecular weight: 16340,64190 Da
isoelectric point:5,86495
aromaticity:0,05952
hydropathy:0,12262

Domains

Domains [InterPro]
IPR046285
STR
9–159
IPR046285
IPR046285
STR
20–159
IPR046285
AFD03008.1
1 168
Architecture
STR
STR 9-159 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFD03008.1
1 168
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0008
Central domain 11 157 148 0,0398
C-terminal 158 168 10 0,9788
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-157
C-terminal
158-168

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage metaG-MbCM1
[NCBI] 		1079999 Uroviricota > Caudoviricetes > Pantevenvirales > Galenevirus > Galenevirus mbcm1
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFD03008.1 [NCBI]
Genbank nucleotide accession
JN371769 [NCBI]
CDS location
range 134676 -> 135182
strand -
CDS
ATGAAGAAAATTTTACCTCTCGTTATGTTACTCATGGCAGGAAGTGCTGCTCATGCAGGTGGAATAGTTAGTAAACATCAGTCTAGTTTACAACATACGGTAGAAGCAGGTTACAATTCATACACTAGAGTTGGTAATGCTTTTTCTATCTCTGGTACGAATGTAACTACATCACACACACCATCAGGTGGTAGTGCAGTTTCAGGTGGTATTGGTATTAACTCCTATAGTGCAACTACAGGTGTTGCAAGTGTTGGAGAAATTTCAGCAACACAAACTGGATCAGGATCATTCAATTTCAGTCAGTCATTCACAGCAGGTGATGCTGCAGGATCAGGTACTGATGAAGCATTGTTCGGTAATCAAGTCCAGAACTCTGGTGGTACTGCAGGTAGTGCTGCTGTTGGTACTGTTACCAACGCACATGCTGTTACTCTTACAGGTGGCGGTTTAGCAGGTACTACAACTACTGGTCAATTTGTTAGTGAAATCTCTGTCTTTGACTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1b138d506c8970b5d838d8baed1b2f9351aed3f132956836b8be499050e67dc9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3355
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Viral Tagging: a high-throughput approach to explore virus-host interactions Deng,L., Sullivan,M.B., Poulos,B. and Ignacio Espinoza,J.C. 2019-08-05 — GenBank