Protein

View in Explore
Genbank accession
AFD03008.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKKILPLVMLLMAGSAAHAGGIVSKHQSSLQHTVEAGYNSYTRVGNAFSISGTNVTTSHTPSGGSAVSGGIGINSYSATTGVASVGEISATQTGSGSFNFSQSFTAGDAAGSGTDEALFGNQVQNSGGTAGSAAVGTVTNAHAVTLTGGGLAGTTTTGQFVSEISVFD
Physico‐chemical
properties
protein length:168 AA
molecular weight: 16340,64190 Da
isoelectric point:5,86495
aromaticity:0,05952
hydropathy:0,12262

Domains

View on InterPro
Domain architecture
AFD03008.1
1 168 aa
STR 9–159 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AFD03008.1
1 168 aa
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0008
Central domain 11 157 148 0,0398
C-terminal 158 168 10 0,9788
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Synechococcus phage metaG-MbCM1 [NCBI] · taxon 1079999
Uroviricota Caudoviricetes Pantevenvirales Galenevirus Galenevirus mbcm1
Host
Synechococcus [NCBI] · taxon 1129
cellular organisms Bacteria Bacillati Cyanobacteriota/Melainabacteria group Cyanobacteriota Cyanophyceae

Coding sequence (CDS)

Genbank protein accession
AFD03008.1 [NCBI]
Genbank nucleotide accession
JN371769 [NCBI]
CDS location
range 134676 -> 135182
strand -
CDS
ATGAAGAAAATTTTACCTCTCGTTATGTTACTCATGGCAGGAAGTGCTGCTCATGCAGGTGGAATAGTTAGTAAACATCAGTCTAGTTTACAACATACGGTAGAAGCAGGTTACAATTCATACACTAGAGTTGGTAATGCTTTTTCTATCTCTGGTACGAATGTAACTACATCACACACACCATCAGGTGGTAGTGCAGTTTCAGGTGGTATTGGTATTAACTCCTATAGTGCAACTACAGGTGTTGCAAGTGTTGGAGAAATTTCAGCAACACAAACTGGATCAGGATCATTCAATTTCAGTCAGTCATTCACAGCAGGTGATGCTGCAGGATCAGGTACTGATGAAGCATTGTTCGGTAATCAAGTCCAGAACTCTGGTGGTACTGCAGGTAGTGCTGCTGTTGGTACTGTTACCAACGCACATGCTGTTACTCTTACAGGTGGCGGTTTAGCAGGTACTACAACTACTGGTCAATTTGTTAGTGAAATCTCTGTCTTTGACTAG

Genome Context

Tertiary structure

AFD03008.1
ESMFold structure
Source ESMFold
pLDDT 33.6
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Viral Tagging: a high-throughput approach to explore virus-host interactions Deng,L., Sullivan,M.B., Poulos,B. and Ignacio Espinoza,J.C. 2019-08-05 — GenBank