Phage RBP Database

Genbank accession

WPJ55960.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C1 confidence 0,833

C1	0,833
C3	0,512
C2	0,004

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MALIRLVAPERVFSDLASMVAYPNFQVQDKIILLGSAGGDFTFTTAASVVDNGTVFAVPGGYLLRKFVGPAYSSWFSNWAGIVTFMNAPNRRLIVDTVLQATSVLNIKSNSTLEFTDTGRILPDAAAARQVLNIIGSAPSVFVPLAADAAAGSKVITVAAGALSVVKGTYLYLRSNKLCDGGPNKYKVKISQIRKVVGVSTSGGVASIRLDKALHYNYHLSDAAEVGVPTMVENVTLVSPYINEFGYDDLNRFFTIGISANFAADLHIQDGVIIGNKRPGASDINGRSAIKFNNCVDSTVKGTCFYNIGWYGVEVLGCSEDTEVHDIHAMDVRHAISLNWQSTADGDKWGEPIEFLGVNCEAYSTTQAGFDTHDIGKRVKFVRCVSYDSADDGFQARTNGVEYLNCRAYRAAMDGFASNTGVAFPIYRGCLAYDNVRSGFNCSYGGGYVYDCEAHGSQNGVRINGGRVKGGRYTRNSSSHIFVTKDVAETAQTSLEIDGASMRYDGTGRAVYFHGTMGIDPTLVSMSNNDMTGHGLFWALLSGYTVQPTPPRMSRNLLDDTSIRGVATLVAGEATVNARVRGNFGSVANSFKWVSEVKLTRLTFPSSAGALTVTSVAQNQDVPTPNPDLNSFVIKSSNAADVSQVAWEVYL

Physico‐chemical properties

protein length:	651 AA
molecular weight:	69924,92350 Da
isoelectric point:	6,42721
aromaticity:	0,09831
hydropathy:	-0,01490

Domain architecture

WPJ55960.1

1 651 aa

ENZ 1–71 · ENZ 141–230 · STR 353–590 · ENZ 591–649 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR057094
ENZ

IPR057094 IPR057095 IPR012334

IPR011050
STR

IPR011050 IPR056204

WPJ55960.1

1651 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0267
ATT

DC_0267 DC_1484

WPJ55960.1

1651 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR057094	ENZ	DC_0326	1	71	InterPro cluster	K1 capsule-specific polysaccharide lyase, N-terminal domain	N-terminal	High	Text match	57 proteins / 57 hits
IPR057095	ENZ	DC_0534	141	230	InterPro cluster	K1 capsule-specific polysaccharide lyase, rider domain	Central	High	Text match	77 proteins / 77 hits
IPR012334	STR	IPR012334	353	590	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	358	472	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR056204	ENZ	DC_0206	563	649	InterPro cluster	K1 capsule-specific polysaccharide lyase, C-terminal domain	C-terminal	High	Text match	97 proteins / 97 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WPJ55960.1

1 651 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	78	78	0,9900
Central domain	79	566	489	0,9925
C-terminal	567	651	84	0,9362

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage RCIP0099 [NCBI] · taxon 3094267

No lineage information

Host

Klebsiella pneumoniae [NCBI] · taxon 573

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

WPJ55960.1 [NCBI]

Genbank nucleotide accession

OR532893.1 [NCBI]

CDS location

range 3840 -> 5795
strand +

CDS

ATGGCGTTAATTAGATTAGTAGCTCCAGAGCGGGTGTTCTCCGACTTGGCGAGCATGGTGGCATATCCAAACTTTCAGGTACAGGACAAGATTATCCTGCTGGGCAGCGCCGGTGGGGATTTCACCTTTACTACCGCTGCGTCGGTAGTGGATAACGGAACTGTGTTTGCTGTGCCTGGTGGGTATCTGCTCCGTAAATTCGTGGGCCCGGCATACAGCTCCTGGTTCAGCAATTGGGCGGGCATAGTCACGTTCATGAACGCGCCTAATAGGCGCCTGATTGTGGACACAGTCTTGCAGGCCACGAGTGTGCTCAACATCAAAAGCAACTCTACGCTGGAGTTTACTGATACCGGAAGAATCCTGCCGGATGCTGCGGCTGCACGTCAAGTGCTTAACATTATCGGCTCGGCACCCTCGGTGTTCGTACCGTTAGCGGCGGATGCCGCAGCGGGCAGCAAAGTCATTACGGTGGCTGCCGGGGCTTTGTCTGTGGTAAAAGGTACGTACTTGTATCTTCGCTCTAATAAGCTGTGCGACGGCGGGCCTAACAAGTACAAGGTAAAGATTTCCCAGATTAGGAAAGTGGTGGGGGTTAGCACCTCCGGTGGTGTCGCCAGTATTAGACTGGATAAAGCGCTGCACTATAACTACCACCTGTCTGATGCCGCGGAAGTAGGTGTCCCTACAATGGTAGAGAACGTAACTCTAGTATCTCCGTACATCAACGAGTTCGGCTACGACGACTTGAACCGGTTCTTTACTATCGGCATCTCTGCCAACTTCGCTGCGGACTTGCACATTCAGGACGGGGTTATTATTGGCAACAAACGCCCGGGGGCTTCTGATATAAACGGGCGTAGTGCTATCAAGTTCAATAACTGCGTAGATAGTACCGTTAAGGGTACGTGCTTCTACAACATCGGATGGTATGGGGTAGAGGTGCTCGGCTGCTCAGAGGACACGGAAGTACACGATATCCACGCCATGGACGTACGCCACGCAATCTCTCTGAACTGGCAGAGCACTGCAGACGGGGACAAATGGGGAGAGCCTATCGAGTTCTTAGGCGTTAACTGCGAAGCCTACAGCACAACCCAAGCTGGGTTTGATACTCACGACATCGGTAAGCGTGTGAAGTTCGTTCGCTGCGTTTCATACGACAGTGCTGACGATGGGTTCCAAGCGCGCACTAACGGGGTGGAGTACTTGAACTGTCGAGCTTACCGTGCAGCTATGGATGGATTCGCCTCCAACACCGGTGTAGCCTTCCCTATCTATAGGGGGTGCTTAGCTTATGACAACGTACGCTCTGGCTTTAACTGTTCGTACGGTGGTGGCTACGTTTATGACTGCGAGGCTCACGGTAGCCAGAATGGTGTGCGAATCAACGGGGGCCGTGTTAAGGGTGGTCGGTACACGCGCAACTCCAGCTCTCACATCTTCGTCACTAAGGATGTAGCTGAGACGGCGCAGACGTCCCTGGAGATTGATGGCGCGAGCATGCGCTACGATGGTACCGGAAGAGCTGTGTACTTCCACGGCACTATGGGCATTGACCCTACCCTGGTATCTATGTCCAATAACGACATGACCGGTCACGGCTTGTTCTGGGCATTGCTGAGCGGCTACACCGTTCAACCTACGCCTCCGCGCATGTCCAGGAACTTGCTGGATGACACGAGCATTCGAGGAGTGGCAACACTGGTTGCTGGTGAGGCTACAGTCAACGCCCGTGTACGCGGAAACTTTGGCAGCGTAGCTAACTCCTTCAAGTGGGTGTCTGAGGTTAAGCTGACGCGGTTGACCTTTCCTTCCAGTGCCGGGGCCTTAACGGTGACTAGCGTAGCACAGAACCAGGATGTGCCTACACCTAATCCGGACCTAAACAGCTTCGTGATTAAGAGCAGTAACGCAGCGGATGTATCCCAGGTAGCCTGGGAGGTGTATCTCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)