Phage RBP Database

Genbank accession

QAX96801.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,80

Seq2Symm

C1 confidence 0,998 truncated

C1	0,998
C2	0,006
I	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSSKLIFTMQYFRGEKKREYLADPETGLIPGTGETGGGLEEYDRAKAWDKDDVVIRDGAIFQANEDIPAGSSFIEGLTGPTWLKLGAEAVATLPDYAVGIRYLKDQAIARGRVIYRAKNDFTSAAWNPAQWETVFSEDAVRDKVADFSTAQSYVTHELVAYNGDIYAANEDMAAGAFDASKWQNLTTPNVTYVDDYAPGTVYTKDAVVMRNGQLFRATQQTATAWDEGDWQAVSSVSTVRGYWDLNATYKANEIVIANDRFYRANGDIGSGTTFTVGTGTEEWTEVSGPVTPPITADDFKASTLYAKNQVIVVNGILYRAKAEFTSLSAFSIADWDPVSYDPETAVDAWQANTDYKAGQLATLVVNGRNTLYRARADITGGASFVAAEWDDLTQTSTWRAEWDISNIYAKDDVVWRAGHLYIANDAVPINTAWVEGITGATWARLLAEPVSKISVWAATTSYQKDELLAYDGNIYRVEAPFVSGAAFTSGGLELLTAGKYTKIPAFRGSNAYVQDETIAEGGILYRAKADFTSATNFNEADWEVIADIATNILYDFSITEDYVENEIVFHLDSIWRAKGDLAPGAWDESDWEFVSEYSTFKGQHVQARDYKQDDVVIHNNRLYRANSNIAGGTAFLAGSGGNQWTEVSPPGNPSAPDWASSTAYVQHNLVIHGGVLYRCKTDHTSGSSFLASQWETLKAEAATLASTYQNGQEYVLDQLIEYNGILYRCIEAMLSSPVTFEPDKWQGVSVSYIRISAHSASAVYREGELIWHVNRLYRAKAGINPGRAFSLNDWAISEDTNYVSEYAENEDYRLGQLIRSGVDLYIANEAITGAPAVLDETKWNRVGYRPTVQGAHDDTLAYKQGDIVLKEGTWYEANADIAANVALSEGTTGATWKRVTDSMTIKAHAADAIFFPGQLCLHEERVYTAKEFLTVDSSNTFQSIKWEKLGSFVTLAEDYQDNIEYKKDQIIFHLSVLYRRIATGTDTTWTAANWQALSLTAAILNDFDNTKNYAANEVITRGGATYRVKTPGIKASFVESDWDRIDERPTFRGEWAQANAYKAADFVVRDSILYTANDDVPATTAFSVGTTGATWKRQSPENIAVEHVGAEITVTEGQPVLHRRVLYFATQTVTIPDAFDETGLKKIGRFGMTEQTFEADTWFPAGWLMRQDDKVYKAKTDFTTATAFDVADWDLVSHDYAFIVEFSTADTYYKDQIVINSKLLYRANTDVTVAGAWDSAQWDQLAPAEAARIETHDETNEYLLDDIVFKDGMLWRANSAIAANTPFVKGTSANEWRAAIELKIKAFAEGENILTGEYRLIEGHLAVAKEDIASTAAYATETEKWSILSHDISKLKMVYPVREYLPAETNINYDGSIDGSVSDTWVVTGSLPTTELSVLLWLGYEFHLGGLDVTDKVVQKGSSAPYGFGISGVWIESGDVLEVR

Physico‐chemical properties

protein length:	1444 AA
molecular weight:	159850,15480 Da
isoelectric point:	4,63507
aromaticity:	0,11911
hydropathy:	-0,28767

Domain architecture

QAX96801.1

1 1444 aa

STR 145–234 · STR 242–341 · CBM 346–392 · STR 399–490 · STR 603–698 · STR 705–795 · STR 804–899 · STR 957–1045 · CBM 1052–1098 · STR 1204–1299 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.90
STR

G3DSA:2.10.10.90 G3DSA:2.10.10.90 IPR003610 IPR003610 IPR003610 IPR003610 IPR003610 IPR003610 G3DSA:2.10.10.90 G3DSA:2.10.10.90 IPR003610 G3DSA:2.10.10.90

IPR003610
CBM

IPR003610 IPR003610 G3DSA:2.10.10.90 G3DSA:2.10.10.90 G3DSA:2.10.10.90 IPR003610

QAX96801.1

11444 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1986
ATT

DC_1986 DC_1986 DC_1986 DC_1986 DC_1986 DC_1986 DC_1986 DC_1986

DC_1986
ATT

DC_1986 DC_1986 DC_1986 DC_1986 DC_1986

QAX96801.1

11444 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	145	234	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	193	233	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	242	341	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	296	338	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
IPR003610	CBM	DC_0028	346	392	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
IPR003610	CBM	DC_0028	399	445	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	405	490	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	453	490	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
IPR003610	CBM	DC_0028	597	647	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	603	698	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	655	697	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
IPR003610	CBM	DC_0028	705	748	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	706	795	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	804	897	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	853	899	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	957	1045	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits
IPR003610	CBM	DC_0028	1052	1098	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.90	STR	G3DSA:2.10.10.90	1204	1299	Merged direct domain	G3DSA:2.10.10.90	Central	Low	Positional only	29 proteins / 29 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QAX96801.1

1 1444 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	1322	1322	0,8778
Central domain	1323	1433	112	0,5402
C-terminal	1434	1444	10	0,0500

Note: Constraints were applied during segmentation.
Fixed 57 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Vibrio phage vB_VmeM-Yong MS31 [NCBI] · taxon 2500764

No lineage information

Host

Vibrio mediterranei [NCBI] · taxon 689

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales

Genbank protein accession

QAX96801.1 [NCBI]

Genbank nucleotide accession

MK308676.1 [NCBI]

CDS location

range 179218 -> 183552
strand +

CDS

ATGAGTAGCAAATTAATCTTTACCATGCAATATTTCCGCGGGGAGAAAAAGCGCGAATATCTCGCTGACCCTGAAACCGGACTTATTCCTGGTACTGGTGAAACGGGCGGAGGTCTAGAAGAATACGACCGCGCCAAAGCATGGGATAAAGACGACGTCGTTATTCGCGACGGCGCTATCTTCCAAGCGAACGAAGACATTCCTGCGGGCTCTTCTTTCATTGAAGGCCTTACTGGCCCGACTTGGCTTAAGTTAGGCGCAGAAGCGGTAGCGACACTTCCCGACTACGCTGTAGGCATTCGTTATCTTAAAGACCAAGCGATTGCCCGTGGTCGAGTTATCTACCGTGCGAAGAATGACTTTACTTCTGCCGCGTGGAATCCAGCACAATGGGAAACGGTCTTCTCTGAAGACGCAGTTCGCGATAAGGTAGCGGACTTCAGTACTGCACAGTCTTACGTAACGCATGAATTAGTTGCCTACAACGGTGACATCTATGCGGCAAACGAAGATATGGCGGCAGGGGCCTTTGACGCATCTAAATGGCAGAATCTAACTACGCCTAACGTAACATACGTCGATGACTATGCCCCGGGCACAGTCTATACCAAAGACGCTGTAGTTATGCGCAATGGTCAATTGTTCCGTGCAACGCAACAAACTGCGACAGCATGGGATGAAGGCGATTGGCAAGCGGTTTCTTCAGTTTCTACTGTTCGTGGTTACTGGGACCTTAATGCAACCTATAAAGCAAACGAAATAGTTATCGCTAATGACCGCTTCTATCGTGCTAACGGCGATATCGGTTCAGGCACTACGTTCACTGTAGGTACTGGTACTGAAGAATGGACTGAGGTGTCGGGCCCTGTTACTCCGCCTATCACGGCAGATGACTTTAAAGCTTCTACGCTTTATGCTAAGAATCAGGTTATTGTAGTTAACGGCATCCTTTATCGGGCTAAGGCAGAGTTCACTTCACTCTCTGCATTTAGCATCGCGGATTGGGACCCTGTCTCTTATGACCCAGAAACGGCCGTAGACGCATGGCAAGCTAATACTGACTATAAAGCAGGGCAGTTAGCCACGTTAGTTGTAAATGGTCGTAACACGCTTTACAGAGCGCGTGCGGACATCACAGGCGGAGCGAGTTTCGTAGCGGCCGAATGGGACGACCTAACTCAAACGTCGACCTGGCGTGCTGAGTGGGATATCTCGAACATCTATGCTAAGGACGACGTTGTGTGGCGTGCAGGGCATCTGTACATTGCCAACGATGCGGTACCTATCAACACTGCATGGGTAGAAGGCATCACCGGCGCTACGTGGGCTCGTTTGTTGGCCGAACCAGTATCTAAGATTTCTGTTTGGGCAGCAACAACTTCTTATCAGAAAGATGAACTTCTAGCTTATGATGGCAACATCTATCGCGTGGAAGCCCCTTTCGTTTCTGGCGCGGCATTTACAAGCGGTGGCCTAGAACTGCTCACTGCCGGTAAGTATACTAAGATTCCTGCATTCCGTGGCTCTAACGCTTACGTCCAAGACGAGACGATTGCCGAAGGCGGAATCCTTTACCGCGCTAAAGCGGACTTTACGTCAGCTACAAACTTCAATGAAGCAGACTGGGAAGTTATCGCGGACATCGCGACAAACATCCTGTACGACTTCAGTATCACAGAAGACTATGTAGAAAATGAAATCGTTTTCCACTTAGACTCCATCTGGCGTGCTAAAGGCGACCTTGCTCCTGGGGCTTGGGACGAGTCCGATTGGGAATTCGTTTCTGAATACTCAACCTTTAAAGGTCAGCACGTCCAGGCACGTGACTACAAGCAAGACGACGTGGTAATCCACAACAACCGATTATATCGAGCAAACTCGAATATTGCGGGCGGCACTGCTTTCTTGGCAGGTAGCGGAGGTAACCAATGGACTGAGGTTTCCCCTCCAGGAAATCCTTCTGCTCCGGACTGGGCAAGCTCAACGGCATATGTTCAGCACAACTTGGTCATTCACGGTGGCGTCCTTTACCGCTGTAAGACAGACCATACTTCAGGAAGTAGCTTCCTCGCTTCTCAGTGGGAGACATTGAAAGCAGAAGCGGCTACCTTGGCTTCGACTTACCAGAATGGCCAAGAATATGTCCTTGACCAACTGATTGAATACAACGGCATTCTTTACCGCTGTATCGAAGCGATGCTAAGTTCACCTGTAACGTTCGAGCCAGACAAATGGCAAGGCGTATCGGTTTCTTATATCCGCATCTCTGCGCATAGTGCTTCAGCCGTTTATCGTGAAGGCGAATTGATTTGGCACGTGAATCGCTTGTATCGTGCTAAGGCAGGCATTAACCCAGGTCGTGCTTTCTCGCTTAACGATTGGGCTATCTCTGAAGATACCAACTACGTGAGCGAATATGCGGAGAATGAAGACTACCGCCTAGGCCAACTTATCCGTTCAGGTGTTGACTTATATATCGCAAACGAAGCTATTACCGGTGCTCCTGCTGTACTTGACGAAACTAAGTGGAACCGCGTAGGTTACCGCCCAACCGTTCAAGGCGCGCATGACGATACTCTTGCGTATAAGCAAGGGGACATTGTTCTTAAGGAAGGTACTTGGTACGAAGCTAACGCGGACATCGCGGCTAACGTGGCCCTGTCTGAAGGTACTACTGGCGCCACATGGAAACGTGTAACCGACAGCATGACCATCAAGGCACATGCGGCAGACGCAATCTTCTTCCCTGGTCAGCTCTGTCTACATGAAGAGCGCGTTTACACAGCGAAGGAATTCCTAACGGTAGACAGCTCTAATACGTTCCAGTCTATCAAGTGGGAGAAGCTAGGTTCGTTTGTTACTCTAGCGGAAGACTACCAAGACAACATCGAATACAAGAAAGACCAAATCATCTTCCATCTGAGCGTTCTTTACCGCCGCATTGCGACGGGCACCGATACGACTTGGACGGCAGCAAATTGGCAAGCTCTTTCTTTAACCGCGGCGATTCTAAACGACTTCGACAACACGAAGAACTATGCTGCCAACGAGGTCATCACTCGCGGAGGTGCTACCTACCGTGTTAAGACTCCTGGCATTAAAGCTAGCTTCGTAGAAAGCGATTGGGACCGCATCGATGAGCGTCCTACGTTCCGTGGCGAATGGGCTCAGGCTAATGCTTATAAAGCAGCTGACTTCGTAGTTCGCGACAGTATCCTTTACACTGCCAACGATGATGTTCCGGCAACAACTGCATTCTCAGTCGGCACTACCGGCGCTACATGGAAACGTCAGTCGCCAGAGAACATTGCAGTTGAGCACGTAGGTGCTGAGATTACGGTAACTGAGGGACAACCTGTTCTTCATCGCCGTGTTCTTTACTTCGCAACACAGACGGTAACCATTCCTGATGCGTTCGATGAAACCGGACTTAAGAAGATTGGTCGCTTCGGCATGACCGAGCAAACCTTCGAAGCCGATACTTGGTTCCCTGCTGGTTGGTTAATGCGTCAAGACGATAAAGTCTACAAAGCGAAAACGGACTTTACCACTGCGACGGCCTTTGATGTTGCTGACTGGGATTTAGTTTCTCATGACTACGCGTTCATTGTAGAGTTCAGCACAGCTGACACTTACTACAAAGACCAAATCGTTATCAACTCTAAACTACTTTACCGTGCTAATACAGACGTTACTGTAGCGGGTGCTTGGGACTCTGCCCAATGGGACCAATTGGCTCCAGCTGAAGCAGCTCGTATCGAGACTCATGACGAGACTAACGAATACCTACTTGACGACATTGTCTTCAAAGACGGTATGTTGTGGCGTGCTAACTCTGCCATCGCAGCGAACACTCCGTTCGTTAAGGGCACGAGTGCCAACGAATGGCGTGCAGCCATTGAACTTAAGATTAAAGCGTTTGCTGAAGGTGAGAACATTCTTACCGGAGAGTACCGCTTAATCGAAGGTCACTTAGCCGTAGCAAAAGAAGACATTGCATCTACTGCTGCGTACGCTACGGAAACTGAGAAGTGGAGTATTCTGTCTCACGACATCTCCAAACTTAAGATGGTTTACCCAGTCCGCGAATACTTACCGGCCGAGACAAACATCAACTATGATGGTTCAATCGACGGTTCAGTATCCGACACTTGGGTAGTCACGGGTAGCTTACCGACTACAGAACTTTCAGTGTTACTATGGTTAGGTTACGAGTTCCACTTAGGTGGCCTAGACGTAACTGACAAAGTAGTACAGAAGGGTTCGTCAGCACCGTATGGTTTCGGCATTAGCGGTGTCTGGATTGAGTCAGGCGACGTCCTAGAGGTACGATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)