Phage RBP Database

Genbank accession

YP_009603858.1 [GenBank]

Protein name

tail spike protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,65

Protein sequence

MSNAAGAPGADGAPGADGADGADGADGADGAPGVGVPAGGTTGQVLSKVDGTDYNTTWVTGGGGGVPAEHDHINTEVTGSLTVSGSFSSPGVGSNSLKLGVNSQSDGFRSVAVGDYSEAPALYTVAIGRGALASDNGATSIGQGANGSGQYCVAIGQAAAASANWAVAVGRAASASDIGAIAIGYGADASHRGSLAFGRDTATTRQNQIVMGSTIANYDIREVAMGLGAENYRANLYGGVTLRATDAELTDNDGADLYIRPGAPTGAGIGGTLSLQTTPSGASSDVLGTPVDRITILQDGCVGVGVTAPTDKFEVDGKIRAVDINFSGLPTSAAGLAAGDVWNDAGTLKIV

Physico‐chemical properties

protein length:	351 AA
molecular weight:	34125,77930 Da
isoelectric point:	4,26198
aromaticity:	0,04843
hydropathy:	-0,00456

Domain architecture

YP_009603858.1

1 351 aa

STR 89–252 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR011049
STR

IPR011049 IPR011049

IPR011049
STR

IPR011049

cd12820
STR

cd12820

cd12820
STR

cd12820

IPR008640
Unmapped

IPR008640 IPR008640

YP_009603858.1

1351 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1723
RBD

DC_1723

YP_009603858.1

1351 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR011049	STR	IPR011049	89	147	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR011049	STR	IPR011049	91	229	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
cd12820	STR	DC_0258	95	213	InterPro cluster	cd12820	Central	Low	Positional only	46 proteins / 51 hits
cd12820	STR	DC_0258	95	210	InterPro cluster	cd12820	Central	Low	Positional only	46 proteins / 51 hits
IPR008640	Unmapped	-	123	145	InterPro	Trimeric autotransporter adhesin YadA-like, head domain	-	-	-	-
IPR011049	STR	IPR011049	148	252	Merged direct domain	Serralysin-like metalloprotease, C-terminal	Central	Low	Positional only	81 proteins / 81 hits
IPR008640	Unmapped	-	166	187	InterPro	Trimeric autotransporter adhesin YadA-like, head domain	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009603858.1

1 351 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	79	79	0,6738
Central domain	80	278	200	0,6498
C-terminal	279	351	72	0,9139

Note: Constraints were applied during segmentation.
Fixed 48 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Roseobacter phage RDJL Phi 2 [NCBI] · taxon 1682380

No lineage information

Host

Roseobacter denitrificans [NCBI] · taxon 2434

cellular organisms Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales

Genbank protein accession

YP_009603858.1 [NCBI]

Genbank nucleotide accession

NC_041958.1 [NCBI]

CDS location

range 36114 -> 37169
strand +

CDS

GTGAGCAATGCTGCAGGAGCACCGGGAGCTGATGGAGCGCCGGGAGCAGATGGTGCTGATGGTGCTGATGGTGCTGATGGTGCTGATGGTGCTCCTGGTGTTGGAGTGCCGGCAGGAGGAACAACTGGCCAAGTGCTGTCGAAGGTGGATGGGACAGACTACAACACAACCTGGGTAACGGGAGGCGGAGGCGGGGTTCCTGCTGAGCACGACCATATCAATACTGAGGTTACTGGGTCTCTCACAGTGTCGGGGTCCTTCTCAAGCCCAGGCGTGGGTTCAAATTCCTTGAAGTTAGGGGTAAACTCACAGTCTGACGGGTTTCGGTCTGTCGCAGTAGGAGACTATTCGGAAGCCCCTGCCCTATACACGGTGGCAATTGGCCGTGGAGCCTTAGCATCTGACAATGGTGCAACCTCCATCGGACAGGGGGCAAATGGCTCAGGGCAATACTGCGTGGCCATTGGGCAAGCCGCTGCTGCTTCTGCAAACTGGGCTGTTGCCGTCGGACGCGCTGCATCAGCTTCTGACATTGGGGCAATTGCCATTGGATATGGCGCTGATGCAAGTCACAGGGGCAGCTTGGCTTTTGGCCGAGATACTGCAACAACCCGCCAGAACCAGATTGTCATGGGCTCTACGATTGCGAACTACGATATTCGCGAAGTGGCTATGGGGCTTGGTGCTGAGAACTACCGAGCGAACCTATATGGGGGCGTTACCCTACGGGCTACAGATGCAGAGTTGACTGACAACGACGGAGCAGACCTTTACATAAGACCTGGGGCTCCAACAGGGGCCGGGATAGGAGGCACACTGAGTTTGCAGACAACTCCGTCCGGGGCCTCAAGTGACGTCCTTGGAACACCAGTCGACCGGATAACCATTCTGCAAGATGGTTGTGTGGGCGTCGGAGTGACAGCCCCGACGGATAAGTTCGAAGTGGATGGCAAAATAAGGGCTGTGGATATCAACTTCTCTGGCTTGCCGACCTCTGCGGCGGGGCTAGCTGCAGGGGACGTATGGAACGACGCCGGGACCCTGAAGATAGTTTAA

Title	Authors	Date	PMID	Source
Complete genome sequence of Roseophage RDJL phage 2, a siphovirus infects Roseobacter denitrificans OCh114	Liang,Y., Zhang,Y., Zhou,C., Chen,Z. and Yang,S.	2016-02	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature