Protein

View in Explore
Genbank accession
YP_009603858.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,65
Seq2Symm
C3 confidence 0,991
C3 0,991
C1 0,267
D3 0,002
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MSNAAGAPGADGAPGADGADGADGADGADGAPGVGVPAGGTTGQVLSKVDGTDYNTTWVTGGGGGVPAEHDHINTEVTGSLTVSGSFSSPGVGSNSLKLGVNSQSDGFRSVAVGDYSEAPALYTVAIGRGALASDNGATSIGQGANGSGQYCVAIGQAAAASANWAVAVGRAASASDIGAIAIGYGADASHRGSLAFGRDTATTRQNQIVMGSTIANYDIREVAMGLGAENYRANLYGGVTLRATDAELTDNDGADLYIRPGAPTGAGIGGTLSLQTTPSGASSDVLGTPVDRITILQDGCVGVGVTAPTDKFEVDGKIRAVDINFSGLPTSAAGLAAGDVWNDAGTLKIV
Physico‐chemical
properties
protein length:351 AA
molecular weight: 34125,77930 Da
isoelectric point:4,26198
aromaticity:0,04843
hydropathy:-0,00456

Domains

View on InterPro
Domain architecture
YP_009603858.1
1 351 aa
STR 89–252 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009603858.1
1 351 aa
Domain Start End Length (AA) Confidence
N-terminal 1 79 79 0,6738
Central domain 80 278 200 0,6498
C-terminal 279 351 72 0,9139
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Roseobacter phage RDJL Phi 2 [NCBI] · taxon 1682380
No lineage information
Host
Roseobacter denitrificans [NCBI] · taxon 2434
cellular organisms Bacteria Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales

Coding sequence (CDS)

Genbank protein accession
YP_009603858.1 [NCBI]
Genbank nucleotide accession
NC_041958.1 [NCBI]
CDS location
range 36114 -> 37169
strand +
CDS
GTGAGCAATGCTGCAGGAGCACCGGGAGCTGATGGAGCGCCGGGAGCAGATGGTGCTGATGGTGCTGATGGTGCTGATGGTGCTGATGGTGCTCCTGGTGTTGGAGTGCCGGCAGGAGGAACAACTGGCCAAGTGCTGTCGAAGGTGGATGGGACAGACTACAACACAACCTGGGTAACGGGAGGCGGAGGCGGGGTTCCTGCTGAGCACGACCATATCAATACTGAGGTTACTGGGTCTCTCACAGTGTCGGGGTCCTTCTCAAGCCCAGGCGTGGGTTCAAATTCCTTGAAGTTAGGGGTAAACTCACAGTCTGACGGGTTTCGGTCTGTCGCAGTAGGAGACTATTCGGAAGCCCCTGCCCTATACACGGTGGCAATTGGCCGTGGAGCCTTAGCATCTGACAATGGTGCAACCTCCATCGGACAGGGGGCAAATGGCTCAGGGCAATACTGCGTGGCCATTGGGCAAGCCGCTGCTGCTTCTGCAAACTGGGCTGTTGCCGTCGGACGCGCTGCATCAGCTTCTGACATTGGGGCAATTGCCATTGGATATGGCGCTGATGCAAGTCACAGGGGCAGCTTGGCTTTTGGCCGAGATACTGCAACAACCCGCCAGAACCAGATTGTCATGGGCTCTACGATTGCGAACTACGATATTCGCGAAGTGGCTATGGGGCTTGGTGCTGAGAACTACCGAGCGAACCTATATGGGGGCGTTACCCTACGGGCTACAGATGCAGAGTTGACTGACAACGACGGAGCAGACCTTTACATAAGACCTGGGGCTCCAACAGGGGCCGGGATAGGAGGCACACTGAGTTTGCAGACAACTCCGTCCGGGGCCTCAAGTGACGTCCTTGGAACACCAGTCGACCGGATAACCATTCTGCAAGATGGTTGTGTGGGCGTCGGAGTGACAGCCCCGACGGATAAGTTCGAAGTGGATGGCAAAATAAGGGCTGTGGATATCAACTTCTCTGGCTTGCCGACCTCTGCGGCGGGGCTAGCTGCAGGGGACGTATGGAACGACGCCGGGACCCTGAAGATAGTTTAA

Genome Context

Tertiary structure

YP_009603858.1
ESMFold structure
Source ESMFold
pLDDT 75.8
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete genome sequence of Roseophage RDJL phage 2, a siphovirus infects Roseobacter denitrificans OCh114 Liang,Y., Zhang,Y., Zhou,C., Chen,Z. and Yang,S. 2016-02 — GenBank