Protein

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Genbank accession
YP_009603858.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MSNAAGAPGADGAPGADGADGADGADGADGAPGVGVPAGGTTGQVLSKVDGTDYNTTWVTGGGGGVPAEHDHINTEVTGSLTVSGSFSSPGVGSNSLKLGVNSQSDGFRSVAVGDYSEAPALYTVAIGRGALASDNGATSIGQGANGSGQYCVAIGQAAAASANWAVAVGRAASASDIGAIAIGYGADASHRGSLAFGRDTATTRQNQIVMGSTIANYDIREVAMGLGAENYRANLYGGVTLRATDAELTDNDGADLYIRPGAPTGAGIGGTLSLQTTPSGASSDVLGTPVDRITILQDGCVGVGVTAPTDKFEVDGKIRAVDINFSGLPTSAAGLAAGDVWNDAGTLKIV
Physico‐chemical
properties
protein length:351 AA
molecular weight: 34125,77930 Da
isoelectric point:4,26198
aromaticity:0,04843
hydropathy:-0,00456

Domains

Domains [InterPro]
IPR011049
STR
89–147
IPR011049 IPR011049
IPR011049
STR
91–229
IPR011049 DC_1723
cd12820
STR
95–213
cd12820
cd12820
STR
95–210
cd12820
IPR008640
Unmapped
123–145
IPR008640 IPR008640
YP_009603858.1
1 351
Architecture
STR
RBD
STR 89-252 | RBD 253-351
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009603858.1
1 351
Domain Start End Length (AA) Confidence
N-terminal 1 79 79 0,6738
Central domain 80 278 200 0,6498
C-terminal 279 351 72 0,9139
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-79
Central
80-278
C-terminal
279-351

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage RDJL Phi 2
[NCBI] 		1682380 No lineage information
Host Roseobacter denitrificans
[NCBI] 		2434 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009603858.1 [NCBI]
Genbank nucleotide accession
NC_041958.1 [NCBI]
CDS location
range 36114 -> 37169
strand +
CDS
GTGAGCAATGCTGCAGGAGCACCGGGAGCTGATGGAGCGCCGGGAGCAGATGGTGCTGATGGTGCTGATGGTGCTGATGGTGCTGATGGTGCTCCTGGTGTTGGAGTGCCGGCAGGAGGAACAACTGGCCAAGTGCTGTCGAAGGTGGATGGGACAGACTACAACACAACCTGGGTAACGGGAGGCGGAGGCGGGGTTCCTGCTGAGCACGACCATATCAATACTGAGGTTACTGGGTCTCTCACAGTGTCGGGGTCCTTCTCAAGCCCAGGCGTGGGTTCAAATTCCTTGAAGTTAGGGGTAAACTCACAGTCTGACGGGTTTCGGTCTGTCGCAGTAGGAGACTATTCGGAAGCCCCTGCCCTATACACGGTGGCAATTGGCCGTGGAGCCTTAGCATCTGACAATGGTGCAACCTCCATCGGACAGGGGGCAAATGGCTCAGGGCAATACTGCGTGGCCATTGGGCAAGCCGCTGCTGCTTCTGCAAACTGGGCTGTTGCCGTCGGACGCGCTGCATCAGCTTCTGACATTGGGGCAATTGCCATTGGATATGGCGCTGATGCAAGTCACAGGGGCAGCTTGGCTTTTGGCCGAGATACTGCAACAACCCGCCAGAACCAGATTGTCATGGGCTCTACGATTGCGAACTACGATATTCGCGAAGTGGCTATGGGGCTTGGTGCTGAGAACTACCGAGCGAACCTATATGGGGGCGTTACCCTACGGGCTACAGATGCAGAGTTGACTGACAACGACGGAGCAGACCTTTACATAAGACCTGGGGCTCCAACAGGGGCCGGGATAGGAGGCACACTGAGTTTGCAGACAACTCCGTCCGGGGCCTCAAGTGACGTCCTTGGAACACCAGTCGACCGGATAACCATTCTGCAAGATGGTTGTGTGGGCGTCGGAGTGACAGCCCCGACGGATAAGTTCGAAGTGGATGGCAAAATAAGGGCTGTGGATATCAACTTCTCTGGCTTGCCGACCTCTGCGGCGGGGCTAGCTGCAGGGGACGTATGGAACGACGCCGGGACCCTGAAGATAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c80ec54b41ee03385757aba7a8ae4ec56f2121fdd67b1a0ca4d48c9a85c00021
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7575
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Roseophage RDJL phage 2, a siphovirus infects Roseobacter denitrificans OCh114 Liang,Y., Zhang,Y., Zhou,C., Chen,Z. and Yang,S. 2016-02 — GenBank