Protein

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Genbank accession
QGF20124.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MPSTGKTPTLGLNKWELTDKPKMADFNKDNENIENFATEHKQKMTEVEKKSKSNEDRLDALRVGTINRLEWYNSESYTGPGNITSITDAPTKRRGFKWSGMSTGPQTLEIKTLPVEPNSDYVLAFLEDIEGSFTSYEIKLAYTNGGQQYKSIVKQGSTPQSNGYKLKTHKFSIPSGATDTKIQFVVQGATSSTSLKVLNILLARGNVVPDYNLAPEDVLKRLDLLFEKDTSLQNQVNQKAAKTDVILKVSAPIDRDCNSFKQANAFFYFDTGAGDFKNTPEGTLAHRSNRVFIVRNIGEGGWGFQQEFINLYPTNKITRYIRNYTLVNNSWSKWYRVYDEANKPTPQELGVAAVNMPMADTDLNNHKEPGFYWGYQNMVNAPVPNGVAIMEVVKYNNDCVLQRFTSVRADSNHTTYIRTCYSNKWSSWKKIYDEGNKPTPADIGAWDKTAKRLEGVDLNTITEGGIYSTVRNSIEKNAPTLADGRLIVLSWNTGHWASQMFFADGGGVFTRTATNMEGTGWTNWAEIYSKQNKPTPSDIGASPSNHNHDRRYYPIPKQAITDFNSGIAITEGQHLVSSSTAIPNSPPLYAQDGSSIYGILHVYVSVGDSYNGVNNWIWQDFHDTRGNHYWRYKINNADWSPWRAVYNSVNKPTPQAIGAVATEGDGVINGTLELRKADKLIRFATERGWILKQGGTAAETSLDLVSETDGKAFRVLEPSGKKGIYMWVSSGGTQFNVDGNSVYHQGFKPTPSDIGAASSNHNHDSAYLKKGDTAANSNKLANMGIYDSSKGTQGVPNVGNDGVMEVGHIIDFHLKGSNKDFDMRITAGDGSLDVDKALSAENLWARKYMRINDWYGGPEDGRFWYKQEGRILATENVQDFQVANKSVAKGDYWDNGDSTRVFHLGGGVRLVRQIVKTGYANSGGGVSYTIHFPKAWSWVLPISLVSHNYNDASNNTSGYCTIDHWTNSYLNGGCYQMVAGKPTQIILTYLATE
Physico‐chemical
properties
protein length:993 AA
molecular weight: 110417,67260 Da
isoelectric point:7,63424
aromaticity:0,10775
hydropathy:-0,58640

Domains

Domains [InterPro]
DC_1938
ATT
4–367
DC_1938 DC_1209 DC_1209
Coil
Unmapped
30–50
Coil DC_1209 DC_1142
cd19958
STR
359–432
cd19958 cd19958
QGF20124.1
1 993
Architecture
ATT
STR
ATT 4-367 | STR 368-801 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGF20124.1
1 993
Domain Start End Length (AA) Confidence
N-terminal 1 74 74 0,9600
Central domain 75 273 200 0,4572
C-terminal 274 993 719 0,3856
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-74
Central
75-273
C-terminal
274-993

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPAS-15
[NCBI] 		2653659 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGF20124.1 [NCBI]
Genbank nucleotide accession
MN417334 [NCBI]
CDS location
range 46152 -> 49133
strand +
CDS
ATGCCAAGTACTGGTAAAACTCCTACTCTAGGTTTAAATAAGTGGGAGTTAACAGATAAGCCAAAAATGGCTGATTTTAATAAGGATAATGAAAACATTGAGAACTTTGCTACCGAACATAAACAGAAAATGACTGAGGTAGAAAAGAAGTCTAAATCTAATGAGGATAGGCTAGATGCTTTAAGGGTTGGTACCATTAACAGGCTTGAGTGGTACAACTCTGAGTCTTATACTGGTCCTGGTAATATCACATCTATTACAGATGCTCCAACCAAGAGACGAGGTTTTAAATGGTCTGGTATGTCAACAGGTCCACAAACTCTTGAAATTAAAACTCTGCCTGTAGAACCAAATAGTGATTACGTATTAGCCTTTCTAGAAGATATTGAAGGTAGTTTTACTAGCTATGAAATTAAACTGGCTTACACTAATGGGGGTCAACAATATAAGAGTATTGTAAAACAAGGTAGTACACCACAGAGTAATGGGTACAAGTTAAAAACTCATAAATTTAGTATTCCCTCTGGAGCTACTGATACCAAAATACAATTTGTGGTACAGGGTGCAACCTCAAGTACCTCATTAAAGGTACTAAATATCTTATTAGCTAGAGGTAATGTGGTACCTGACTATAACCTAGCCCCTGAGGATGTGCTAAAAAGATTAGACCTATTATTTGAGAAAGACACTAGTTTACAAAATCAAGTAAACCAAAAAGCTGCTAAAACCGATGTAATTCTAAAGGTTAGTGCTCCTATAGATAGAGATTGTAATTCATTTAAACAAGCGAATGCCTTCTTCTATTTTGATACAGGAGCTGGTGACTTTAAAAATACCCCAGAGGGAACCTTAGCCCATAGGAGTAATAGAGTTTTTATAGTTAGAAATATTGGTGAGGGGGGATGGGGATTCCAACAGGAGTTTATTAATCTATACCCAACCAATAAGATAACCAGATATATTAGAAACTACACATTAGTAAATAATTCTTGGAGTAAGTGGTATAGGGTTTATGATGAGGCTAATAAGCCAACACCCCAAGAATTAGGTGTAGCTGCGGTTAATATGCCCATGGCTGATACAGACCTGAATAATCATAAGGAACCTGGTTTCTATTGGGGTTATCAAAATATGGTCAATGCCCCTGTACCCAATGGTGTAGCAATTATGGAGGTAGTTAAGTATAATAATGATTGTGTATTACAAAGATTTACCTCAGTTAGAGCAGATAGTAACCATACTACTTATATTAGAACCTGCTATTCAAATAAATGGTCTAGCTGGAAGAAGATTTATGATGAGGGTAATAAGCCTACCCCAGCAGATATAGGGGCTTGGGATAAAACAGCCAAAAGACTAGAAGGTGTAGATCTAAACACCATTACAGAGGGAGGTATTTATTCTACAGTTAGAAATTCTATTGAAAAAAATGCCCCAACTCTAGCAGATGGGAGATTGATTGTTTTATCCTGGAATACAGGACACTGGGCTTCTCAAATGTTCTTTGCAGATGGTGGAGGAGTTTTTACTAGAACAGCTACAAACATGGAGGGTACTGGATGGACGAATTGGGCTGAAATATATAGTAAACAAAACAAACCTACACCTTCTGATATAGGGGCTTCCCCTTCTAATCATAACCATGATAGGAGGTACTATCCTATACCTAAACAGGCTATTACTGATTTTAATTCTGGTATAGCTATAACTGAGGGTCAACATCTGGTATCCTCTAGTACAGCTATACCTAATTCACCTCCTCTATATGCTCAAGATGGCAGTAGCATATATGGAATACTTCATGTATACGTTAGTGTTGGTGACTCTTACAATGGTGTGAATAACTGGATATGGCAAGACTTTCATGATACTAGGGGTAATCACTACTGGAGGTATAAAATTAATAATGCTGACTGGAGTCCTTGGAGAGCTGTATATAATTCTGTTAATAAACCAACCCCCCAGGCTATAGGGGCTGTAGCTACTGAAGGTGATGGAGTAATAAATGGAACTCTAGAACTTAGAAAAGCCGATAAGCTAATAAGGTTTGCTACTGAGAGAGGCTGGATTTTAAAACAGGGAGGAACTGCAGCAGAAACCTCCTTGGATCTAGTTTCTGAAACTGATGGAAAGGCCTTTAGGGTATTAGAACCTTCTGGAAAAAAGGGCATCTATATGTGGGTATCATCAGGGGGAACACAATTTAATGTAGATGGCAATTCTGTGTACCATCAAGGATTTAAACCTACTCCATCTGATATTGGAGCAGCCTCTTCTAACCATAACCATGATAGTGCTTATTTGAAGAAAGGAGATACAGCTGCCAACAGTAACAAGCTAGCTAATATGGGTATATATGACTCTAGTAAAGGAACTCAAGGGGTACCTAATGTCGGTAATGATGGGGTTATGGAAGTAGGGCATATTATAGACTTCCACCTAAAAGGCAGTAATAAAGATTTTGATATGAGGATAACCGCTGGAGATGGATCCCTAGATGTGGATAAGGCTCTATCAGCTGAAAACCTATGGGCTAGAAAATATATGAGAATAAATGACTGGTATGGTGGTCCAGAAGACGGAAGATTTTGGTATAAACAGGAGGGTAGAATACTAGCCACTGAGAATGTTCAAGACTTCCAGGTAGCTAATAAATCTGTAGCTAAAGGAGACTATTGGGATAATGGAGACAGTACTAGGGTATTCCACTTGGGTGGAGGTGTAAGGTTAGTTCGTCAAATAGTTAAGACAGGCTATGCTAACTCAGGTGGGGGTGTAAGCTATACTATACATTTCCCTAAGGCTTGGAGTTGGGTATTACCAATATCTCTAGTATCACATAACTATAATGACGCTTCCAATAATACCTCTGGTTATTGTACTATTGACCATTGGACTAACTCATACCTAAATGGTGGATGTTATCAAATGGTAGCTGGTAAACCAACTCAAATAATACTAACCTACTTAGCTACTGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb115ceb45539e97fc489b29459f1f686dd03d2015d5527104c72f4fb37f2023
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6767
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Food Application of a Bacteriophage-Derived Endolysin and Its Cell-wall Binding Domain for Biocontrol and Rapid Detection of Clostridium perfringens Cho,J.-H., Kwon,J.-G., Kong,M., Ryu,S. and Lee,J.-H. 2021-05 — GenBank