Phage RBP Database

Genbank accession

XDF89536.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,85

TF

Evidence RBPdetect2

Probability 0,92

Protein sequence

MAVAGRKSGSSDQRNPVESPDSLHSKAEVRILLALGEGPWPDIPAADLPKRVLLDGTPIQNQDGTFNMEGIKLDFRPGTEDQTYIPGVPGVESETGVGVELKYGEGAAWVRQISNTQIDAVRIRIGLARLVQQLDNGDRVGAVVDYRIDLAVGGGSYSTVVNGKFEGKTTTLYERDHRIDLPASSTGWRVRVVRLTPDSTTDMLVSQTQIQAITEIVDVKLTYPHTVLLFASFDAKLFSNIPPISILSEGREVQIPTNYDPVAKTYSGTWNGEFKRAWTDNPAWVMFDAVTNERFSIGDKIPAFLMDKWQLYRIAQRCDERIPDGAGGTEVRYKCDIYVQSRVQAWTLIRDLCAIFCGMSYWGNQMLNFISDSPSDAVQVLTNANVVNGQFVYKGGSVKNRRSVGMVSYDDPVNHYQSNVAVVPVQEMVQRYGYDQALELSGIGCTRLSEAQRKARYGVLTNAMDEQVSFVIGMEGIEFMPCDVVAIADAEFSGAQTGGRVERDSTGRTIYLDRAISDVVAIGDTIIIRAVGQKEAERRTIAAIASDRRSVTVSADIPTGIAAFTPWVIDSANLAVRMFRITSVKWNEADNTFSCSGLIYNADKYDAVDSGARLDDRPVSLIPSAIVPAPTNLAMEPYYVMNQGVRTVSISFTWDRVDKASHYEMQWRRDNNDWINVPRQTTMIYDLNGVFSGDYQFRVRAISNVGEISSGWATSGVETIEGRAGDVPAIPSFTTTALVFGVRLDWSFPNDAEDTNKTEIRYSMNANGTDAMHLSDVAYPGTTYSQMGLSVGQRFYYSARLVDRQGNIGPWTAWISGESSTDVSDISDAIFEDIKKTDGWKDLIGGMGDAATISADAMRSTIETAKALLKNTYADLAETRRWFAENGARKAEITETRLVIADEVQALALQMIELKAQIDEEVTSQITSLQQTVSTLAETTAQDITSLESRMGSAESGVSANAGAISGLTTTVTNQGGLITANSQSIAQMTVTINGFETSITDITNVTNDINGNLSAYRTLRIKANVNGVDYVAGTTTGIQNTDTGVRSYVNFLADQFAMLINVNGTPTPIFTNVGTQVILRSAVIGDATITSAKIANGAIGRLQIADSIQSNNYAQGSTGMKLDFANGTLELNGNEPGQGRKTIGNIRDVVYNENNQVVVVIGKRL

Physico‐chemical properties

protein length:	1166 AA
molecular weight:	127103,08740 Da
isoelectric point:	4,85731
aromaticity:	0,07719
hydropathy:	-0,20154

Domain architecture

XDF89536.1

1 1166 aa

ATT 91–218 · ATT 343–503 · STR 628–719 · RBD 1004–1143 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR003961

IPR013783
STR

IPR013783

IPR036116
STR

IPR036116

XDF89536.1

11166 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

XDF89536.1

11166 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	3	857	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	91	218	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	343	503	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR003961	STR	DC_0003	628	719	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR013783	STR	IPR013783	629	719	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR036116	STR	IPR036116	643	708	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR015406	RBD	DC_0135	1004	1143	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XDF89536.1

1 1166 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	500	500	0,9416
Central domain	501	1109	610	0,0591
C-terminal	1110	1166	56	0,6017

Note: Constraints were applied during segmentation.
Fixed 24 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pectobacterium phage Amona [NCBI] · taxon 3158137

Uroviricota Caudoviricetes

Host

Pectobacterium brasiliense [NCBI] · taxon 180957

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XDF89536.1 [NCBI]

Genbank nucleotide accession

PQ008971.1 [NCBI]

CDS location

range 18986 -> 22486
strand +

CDS

ATGGCAGTAGCGGGAAGAAAAAGCGGTTCATCAGATCAGCGTAATCCGGTTGAGTCGCCGGACAGTCTGCATTCAAAAGCGGAAGTGAGGATCCTGCTTGCGCTAGGTGAAGGGCCGTGGCCTGATATTCCCGCCGCAGACTTGCCGAAACGCGTATTGCTCGACGGCACGCCGATCCAGAATCAGGATGGCACGTTCAACATGGAAGGGATTAAGCTGGATTTTAGGCCAGGTACTGAAGACCAAACTTACATTCCTGGCGTTCCTGGCGTTGAATCTGAAACGGGTGTCGGTGTTGAACTGAAATACGGTGAAGGTGCGGCGTGGGTGCGTCAGATATCCAACACACAGATCGACGCCGTCAGGATCCGCATTGGCCTTGCTCGTCTTGTTCAGCAACTGGATAACGGTGATCGCGTCGGAGCGGTAGTTGATTACCGGATTGATCTGGCTGTCGGCGGCGGTTCGTATTCAACCGTTGTTAACGGTAAATTCGAAGGTAAAACGACAACGCTTTACGAGCGTGACCATCGTATTGATTTACCCGCGTCAAGCACTGGCTGGCGTGTTCGTGTCGTGCGACTGACACCGGATTCAACCACTGACATGCTGGTTAGTCAGACGCAGATCCAAGCTATCACGGAAATCGTTGATGTTAAGCTGACGTATCCGCACACCGTACTATTGTTCGCCTCATTCGATGCAAAATTATTCTCAAACATCCCGCCGATTTCAATTTTGTCTGAAGGTCGGGAGGTGCAGATACCGACGAATTACGATCCGGTTGCGAAGACGTATTCAGGGACATGGAACGGTGAATTTAAACGTGCGTGGACTGATAACCCAGCGTGGGTGATGTTCGACGCTGTGACGAATGAACGGTTCAGTATCGGTGACAAAATCCCAGCGTTCCTGATGGATAAATGGCAACTGTACCGGATTGCACAGCGTTGCGACGAACGGATACCGGACGGCGCAGGCGGTACAGAGGTTCGCTATAAATGTGACATCTACGTGCAAAGCAGGGTGCAGGCGTGGACGCTGATCCGCGATCTTTGCGCGATATTCTGCGGCATGTCGTACTGGGGAAACCAGATGCTGAATTTTATCAGCGATTCCCCATCTGACGCCGTGCAGGTTCTGACAAACGCTAACGTGGTTAACGGTCAGTTTGTTTACAAAGGCGGAAGCGTCAAAAATCGTCGATCCGTTGGCATGGTTAGTTACGACGATCCGGTAAACCACTACCAATCAAATGTGGCCGTGGTTCCGGTGCAAGAAATGGTTCAGCGATACGGTTACGATCAGGCGCTGGAGTTATCCGGTATTGGCTGCACTCGGTTGTCAGAAGCGCAGCGTAAGGCTCGTTACGGCGTGCTCACAAACGCGATGGATGAGCAGGTTTCTTTCGTGATCGGCATGGAAGGGATCGAGTTCATGCCGTGTGACGTGGTGGCGATTGCTGATGCTGAATTCAGCGGTGCGCAGACTGGCGGACGTGTTGAGCGTGATTCAACTGGACGAACAATTTATCTTGATCGGGCGATATCGGATGTTGTTGCCATTGGCGACACTATCATTATCCGCGCCGTAGGCCAGAAAGAGGCAGAGCGCCGGACTATCGCCGCCATTGCATCAGATCGCCGTAGCGTTACTGTTAGCGCAGACATTCCAACTGGTATCGCTGCATTCACGCCGTGGGTAATTGATTCGGCTAATCTGGCCGTACGGATGTTCCGCATCACGTCAGTAAAATGGAATGAAGCGGACAACACGTTTTCATGTTCCGGACTGATCTACAACGCAGACAAATATGATGCGGTGGATTCTGGCGCACGCCTTGATGATCGTCCTGTTTCTCTCATTCCATCAGCGATTGTGCCAGCGCCGACAAATCTTGCAATGGAACCGTATTACGTCATGAATCAGGGCGTGCGCACGGTGAGCATTTCGTTTACGTGGGATCGCGTTGACAAAGCAAGCCATTATGAAATGCAATGGCGGCGCGATAACAACGACTGGATTAACGTCCCGCGCCAGACGACGATGATCTACGATTTGAACGGCGTATTTTCCGGTGATTATCAATTCCGCGTGCGGGCGATATCAAATGTGGGAGAAATATCATCCGGCTGGGCAACGTCCGGAGTTGAAACGATTGAAGGGCGTGCAGGTGATGTTCCAGCGATCCCGTCATTCACAACCACGGCGCTGGTGTTCGGCGTGCGGCTGGACTGGTCATTCCCGAACGACGCAGAGGACACGAACAAAACCGAGATCCGCTATTCGATGAACGCCAATGGAACCGACGCAATGCATCTTTCTGATGTGGCGTACCCTGGCACCACGTATTCACAGATGGGGCTTAGCGTAGGCCAACGATTCTATTACAGCGCCAGATTAGTAGATAGACAAGGGAACATTGGGCCGTGGACGGCTTGGATTTCCGGTGAATCCAGTACGGACGTATCGGATATTTCCGATGCCATATTTGAGGATATCAAAAAGACTGACGGGTGGAAAGACCTGATCGGCGGTATGGGTGACGCGGCGACAATTTCCGCTGATGCTATGCGTTCAACAATCGAAACCGCTAAAGCGCTGCTGAAAAACACCTACGCTGACCTAGCAGAAACTCGCCGTTGGTTCGCGGAGAACGGCGCACGCAAGGCGGAAATCACCGAAACTCGACTGGTCATTGCTGACGAGGTTCAGGCGCTGGCGTTGCAGATGATAGAGCTTAAGGCGCAGATCGACGAGGAAGTCACCAGCCAGATAACCTCCCTTCAACAAACAGTCTCAACTCTTGCCGAAACTACCGCTCAAGATATCACTTCCCTTGAGTCCCGCATGGGCTCAGCAGAATCCGGCGTTAGCGCGAACGCTGGCGCGATTTCAGGACTGACCACTACTGTGACTAATCAGGGCGGGTTAATCACCGCTAACAGCCAGTCTATCGCGCAGATGACGGTGACTATCAACGGGTTTGAAACGTCGATAACCGACATCACCAATGTCACTAACGACATTAACGGCAACCTGAGCGCTTACCGGACGCTACGCATCAAGGCCAACGTTAACGGTGTGGATTATGTCGCCGGAACGACAACGGGCATTCAGAACACGGACACGGGCGTTAGATCGTATGTTAACTTCCTTGCTGACCAGTTCGCGATGCTGATTAACGTGAATGGCACGCCGACGCCGATCTTCACCAACGTTGGCACGCAGGTAATTTTGCGTTCGGCGGTGATTGGGGATGCGACGATAACCAGTGCGAAGATTGCCAACGGTGCAATCGGGAGACTACAGATAGCCGACAGTATCCAGTCGAATAACTATGCTCAGGGTTCAACGGGTATGAAGCTTGATTTTGCCAATGGCACATTAGAGCTTAACGGTAATGAACCAGGTCAGGGAAGAAAAACGATAGGTAATATTCGCGATGTGGTATACAACGAAAATAATCAGGTAGTGGTCGTAATAGGGAAAAGATTATGA

Title	Authors	Date	PMID	Source
A novel genus of Pectobacterium bacteriophages display broad host range by targeting several species of Danish soft rot isolates	Pedersen,J.S., Carstens,A.B., Rothgard,M.M., Roy,C., Viry,A., Papudeshi,B., Kot,W., Hille,F., Franz,C.M.A.P., Edwards,R. and Hansen,L.H.	2024	38986742	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature