Protein

View in Explore
Genbank accession
XDF89536.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAVAGRKSGSSDQRNPVESPDSLHSKAEVRILLALGEGPWPDIPAADLPKRVLLDGTPIQNQDGTFNMEGIKLDFRPGTEDQTYIPGVPGVESETGVGVELKYGEGAAWVRQISNTQIDAVRIRIGLARLVQQLDNGDRVGAVVDYRIDLAVGGGSYSTVVNGKFEGKTTTLYERDHRIDLPASSTGWRVRVVRLTPDSTTDMLVSQTQIQAITEIVDVKLTYPHTVLLFASFDAKLFSNIPPISILSEGREVQIPTNYDPVAKTYSGTWNGEFKRAWTDNPAWVMFDAVTNERFSIGDKIPAFLMDKWQLYRIAQRCDERIPDGAGGTEVRYKCDIYVQSRVQAWTLIRDLCAIFCGMSYWGNQMLNFISDSPSDAVQVLTNANVVNGQFVYKGGSVKNRRSVGMVSYDDPVNHYQSNVAVVPVQEMVQRYGYDQALELSGIGCTRLSEAQRKARYGVLTNAMDEQVSFVIGMEGIEFMPCDVVAIADAEFSGAQTGGRVERDSTGRTIYLDRAISDVVAIGDTIIIRAVGQKEAERRTIAAIASDRRSVTVSADIPTGIAAFTPWVIDSANLAVRMFRITSVKWNEADNTFSCSGLIYNADKYDAVDSGARLDDRPVSLIPSAIVPAPTNLAMEPYYVMNQGVRTVSISFTWDRVDKASHYEMQWRRDNNDWINVPRQTTMIYDLNGVFSGDYQFRVRAISNVGEISSGWATSGVETIEGRAGDVPAIPSFTTTALVFGVRLDWSFPNDAEDTNKTEIRYSMNANGTDAMHLSDVAYPGTTYSQMGLSVGQRFYYSARLVDRQGNIGPWTAWISGESSTDVSDISDAIFEDIKKTDGWKDLIGGMGDAATISADAMRSTIETAKALLKNTYADLAETRRWFAENGARKAEITETRLVIADEVQALALQMIELKAQIDEEVTSQITSLQQTVSTLAETTAQDITSLESRMGSAESGVSANAGAISGLTTTVTNQGGLITANSQSIAQMTVTINGFETSITDITNVTNDINGNLSAYRTLRIKANVNGVDYVAGTTTGIQNTDTGVRSYVNFLADQFAMLINVNGTPTPIFTNVGTQVILRSAVIGDATITSAKIANGAIGRLQIADSIQSNNYAQGSTGMKLDFANGTLELNGNEPGQGRKTIGNIRDVVYNENNQVVVVIGKRL
Physico‐chemical
properties
protein length:1166 AA
molecular weight: 127103,08740 Da
isoelectric point:4,85731
aromaticity:0,07719
hydropathy:-0,20154

Domains

Domains [InterPro]
DC_0014
STR
1–1166
DC_0014
IPR053171
Unmapped
3–857
IPR053171 IPR015406
IPR055385
ATT
91–218
IPR055385 IPR032876 IPR003961
IPR013783
STR
629–719
IPR013783
IPR036116
STR
643–708
IPR036116
XDF89536.1
1 1166
Architecture
STR
ATT
STR
ATT
STR
STR 1-90 | ATT 91-218 | STR 219-342 | ATT 343-503 | STR 504-1166
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDF89536.1
1 1166
Domain Start End Length (AA) Confidence
N-terminal 1 500 500 0,9416
Central domain 501 1109 610 0,0591
C-terminal 1110 1166 56 0,6017
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-500
Central
501-1109
C-terminal
1110-1166

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Amona
[NCBI] 		3158137 Uroviricota > Caudoviricetes >
Host Pectobacterium brasiliense
[NCBI] 		180957 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDF89536.1 [NCBI]
Genbank nucleotide accession
PQ008971.1 [NCBI]
CDS location
range 18986 -> 22486
strand +
CDS
ATGGCAGTAGCGGGAAGAAAAAGCGGTTCATCAGATCAGCGTAATCCGGTTGAGTCGCCGGACAGTCTGCATTCAAAAGCGGAAGTGAGGATCCTGCTTGCGCTAGGTGAAGGGCCGTGGCCTGATATTCCCGCCGCAGACTTGCCGAAACGCGTATTGCTCGACGGCACGCCGATCCAGAATCAGGATGGCACGTTCAACATGGAAGGGATTAAGCTGGATTTTAGGCCAGGTACTGAAGACCAAACTTACATTCCTGGCGTTCCTGGCGTTGAATCTGAAACGGGTGTCGGTGTTGAACTGAAATACGGTGAAGGTGCGGCGTGGGTGCGTCAGATATCCAACACACAGATCGACGCCGTCAGGATCCGCATTGGCCTTGCTCGTCTTGTTCAGCAACTGGATAACGGTGATCGCGTCGGAGCGGTAGTTGATTACCGGATTGATCTGGCTGTCGGCGGCGGTTCGTATTCAACCGTTGTTAACGGTAAATTCGAAGGTAAAACGACAACGCTTTACGAGCGTGACCATCGTATTGATTTACCCGCGTCAAGCACTGGCTGGCGTGTTCGTGTCGTGCGACTGACACCGGATTCAACCACTGACATGCTGGTTAGTCAGACGCAGATCCAAGCTATCACGGAAATCGTTGATGTTAAGCTGACGTATCCGCACACCGTACTATTGTTCGCCTCATTCGATGCAAAATTATTCTCAAACATCCCGCCGATTTCAATTTTGTCTGAAGGTCGGGAGGTGCAGATACCGACGAATTACGATCCGGTTGCGAAGACGTATTCAGGGACATGGAACGGTGAATTTAAACGTGCGTGGACTGATAACCCAGCGTGGGTGATGTTCGACGCTGTGACGAATGAACGGTTCAGTATCGGTGACAAAATCCCAGCGTTCCTGATGGATAAATGGCAACTGTACCGGATTGCACAGCGTTGCGACGAACGGATACCGGACGGCGCAGGCGGTACAGAGGTTCGCTATAAATGTGACATCTACGTGCAAAGCAGGGTGCAGGCGTGGACGCTGATCCGCGATCTTTGCGCGATATTCTGCGGCATGTCGTACTGGGGAAACCAGATGCTGAATTTTATCAGCGATTCCCCATCTGACGCCGTGCAGGTTCTGACAAACGCTAACGTGGTTAACGGTCAGTTTGTTTACAAAGGCGGAAGCGTCAAAAATCGTCGATCCGTTGGCATGGTTAGTTACGACGATCCGGTAAACCACTACCAATCAAATGTGGCCGTGGTTCCGGTGCAAGAAATGGTTCAGCGATACGGTTACGATCAGGCGCTGGAGTTATCCGGTATTGGCTGCACTCGGTTGTCAGAAGCGCAGCGTAAGGCTCGTTACGGCGTGCTCACAAACGCGATGGATGAGCAGGTTTCTTTCGTGATCGGCATGGAAGGGATCGAGTTCATGCCGTGTGACGTGGTGGCGATTGCTGATGCTGAATTCAGCGGTGCGCAGACTGGCGGACGTGTTGAGCGTGATTCAACTGGACGAACAATTTATCTTGATCGGGCGATATCGGATGTTGTTGCCATTGGCGACACTATCATTATCCGCGCCGTAGGCCAGAAAGAGGCAGAGCGCCGGACTATCGCCGCCATTGCATCAGATCGCCGTAGCGTTACTGTTAGCGCAGACATTCCAACTGGTATCGCTGCATTCACGCCGTGGGTAATTGATTCGGCTAATCTGGCCGTACGGATGTTCCGCATCACGTCAGTAAAATGGAATGAAGCGGACAACACGTTTTCATGTTCCGGACTGATCTACAACGCAGACAAATATGATGCGGTGGATTCTGGCGCACGCCTTGATGATCGTCCTGTTTCTCTCATTCCATCAGCGATTGTGCCAGCGCCGACAAATCTTGCAATGGAACCGTATTACGTCATGAATCAGGGCGTGCGCACGGTGAGCATTTCGTTTACGTGGGATCGCGTTGACAAAGCAAGCCATTATGAAATGCAATGGCGGCGCGATAACAACGACTGGATTAACGTCCCGCGCCAGACGACGATGATCTACGATTTGAACGGCGTATTTTCCGGTGATTATCAATTCCGCGTGCGGGCGATATCAAATGTGGGAGAAATATCATCCGGCTGGGCAACGTCCGGAGTTGAAACGATTGAAGGGCGTGCAGGTGATGTTCCAGCGATCCCGTCATTCACAACCACGGCGCTGGTGTTCGGCGTGCGGCTGGACTGGTCATTCCCGAACGACGCAGAGGACACGAACAAAACCGAGATCCGCTATTCGATGAACGCCAATGGAACCGACGCAATGCATCTTTCTGATGTGGCGTACCCTGGCACCACGTATTCACAGATGGGGCTTAGCGTAGGCCAACGATTCTATTACAGCGCCAGATTAGTAGATAGACAAGGGAACATTGGGCCGTGGACGGCTTGGATTTCCGGTGAATCCAGTACGGACGTATCGGATATTTCCGATGCCATATTTGAGGATATCAAAAAGACTGACGGGTGGAAAGACCTGATCGGCGGTATGGGTGACGCGGCGACAATTTCCGCTGATGCTATGCGTTCAACAATCGAAACCGCTAAAGCGCTGCTGAAAAACACCTACGCTGACCTAGCAGAAACTCGCCGTTGGTTCGCGGAGAACGGCGCACGCAAGGCGGAAATCACCGAAACTCGACTGGTCATTGCTGACGAGGTTCAGGCGCTGGCGTTGCAGATGATAGAGCTTAAGGCGCAGATCGACGAGGAAGTCACCAGCCAGATAACCTCCCTTCAACAAACAGTCTCAACTCTTGCCGAAACTACCGCTCAAGATATCACTTCCCTTGAGTCCCGCATGGGCTCAGCAGAATCCGGCGTTAGCGCGAACGCTGGCGCGATTTCAGGACTGACCACTACTGTGACTAATCAGGGCGGGTTAATCACCGCTAACAGCCAGTCTATCGCGCAGATGACGGTGACTATCAACGGGTTTGAAACGTCGATAACCGACATCACCAATGTCACTAACGACATTAACGGCAACCTGAGCGCTTACCGGACGCTACGCATCAAGGCCAACGTTAACGGTGTGGATTATGTCGCCGGAACGACAACGGGCATTCAGAACACGGACACGGGCGTTAGATCGTATGTTAACTTCCTTGCTGACCAGTTCGCGATGCTGATTAACGTGAATGGCACGCCGACGCCGATCTTCACCAACGTTGGCACGCAGGTAATTTTGCGTTCGGCGGTGATTGGGGATGCGACGATAACCAGTGCGAAGATTGCCAACGGTGCAATCGGGAGACTACAGATAGCCGACAGTATCCAGTCGAATAACTATGCTCAGGGTTCAACGGGTATGAAGCTTGATTTTGCCAATGGCACATTAGAGCTTAACGGTAATGAACCAGGTCAGGGAAGAAAAACGATAGGTAATATTCGCGATGTGGTATACAACGAAAATAATCAGGTAGTGGTCGTAATAGGGAAAAGATTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6c290a8b14a4d5c0b7486b17ef6f07cc2be2d336cad4482d47c222bcfc0ed2d7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7838
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel genus of Pectobacterium bacteriophages display broad host range by targeting several species of Danish soft rot isolates Pedersen,J.S., Carstens,A.B., Rothgard,M.M., Roy,C., Viry,A., Papudeshi,B., Kot,W., Hille,F., Franz,C.M.A.P., Edwards,R. and Hansen,L.H. 2024 38986742 GenBank