Protein

View in Explore
Genbank accession
XDF89536.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence Phold
Probability 1,00
Protein sequence
MAVAGRKSGSSDQRNPVESPDSLHSKAEVRILLALGEGPWPDIPAADLPKRVLLDGTPIQNQDGTFNMEGIKLDFRPGTEDQTYIPGVPGVESETGVGVELKYGEGAAWVRQISNTQIDAVRIRIGLARLVQQLDNGDRVGAVVDYRIDLAVGGGSYSTVVNGKFEGKTTTLYERDHRIDLPASSTGWRVRVVRLTPDSTTDMLVSQTQIQAITEIVDVKLTYPHTVLLFASFDAKLFSNIPPISILSEGREVQIPTNYDPVAKTYSGTWNGEFKRAWTDNPAWVMFDAVTNERFSIGDKIPAFLMDKWQLYRIAQRCDERIPDGAGGTEVRYKCDIYVQSRVQAWTLIRDLCAIFCGMSYWGNQMLNFISDSPSDAVQVLTNANVVNGQFVYKGGSVKNRRSVGMVSYDDPVNHYQSNVAVVPVQEMVQRYGYDQALELSGIGCTRLSEAQRKARYGVLTNAMDEQVSFVIGMEGIEFMPCDVVAIADAEFSGAQTGGRVERDSTGRTIYLDRAISDVVAIGDTIIIRAVGQKEAERRTIAAIASDRRSVTVSADIPTGIAAFTPWVIDSANLAVRMFRITSVKWNEADNTFSCSGLIYNADKYDAVDSGARLDDRPVSLIPSAIVPAPTNLAMEPYYVMNQGVRTVSISFTWDRVDKASHYEMQWRRDNNDWINVPRQTTMIYDLNGVFSGDYQFRVRAISNVGEISSGWATSGVETIEGRAGDVPAIPSFTTTALVFGVRLDWSFPNDAEDTNKTEIRYSMNANGTDAMHLSDVAYPGTTYSQMGLSVGQRFYYSARLVDRQGNIGPWTAWISGESSTDVSDISDAIFEDIKKTDGWKDLIGGMGDAATISADAMRSTIETAKALLKNTYADLAETRRWFAENGARKAEITETRLVIADEVQALALQMIELKAQIDEEVTSQITSLQQTVSTLAETTAQDITSLESRMGSAESGVSANAGAISGLTTTVTNQGGLITANSQSIAQMTVTINGFETSITDITNVTNDINGNLSAYRTLRIKANVNGVDYVAGTTTGIQNTDTGVRSYVNFLADQFAMLINVNGTPTPIFTNVGTQVILRSAVIGDATITSAKIANGAIGRLQIADSIQSNNYAQGSTGMKLDFANGTLELNGNEPGQGRKTIGNIRDVVYNENNQVVVVIGKRL
Physico‐chemical
properties
protein length:1166 AA
molecular weight: 127103,08740 Da
isoelectric point:4,85731
aromaticity:0,07719
hydropathy:-0,20154

Domains

Domains [InterPro]
IPR053171
3–857
IPR053171 IPR015406
IPR055385
91–218
IPR055385 IPR032876 IPR003961
IPR013783
629–719
IPR013783
IPR036116
643–708
IPR036116
XDF89536.1
1 1166
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage Amona
[NCBI] 		3158137 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDF89536.1 [NCBI]
Genbank nucleotide accession
PQ008971 [NCBI]
CDS location
range 18986 -> 22486
strand +
CDS
ATGGCAGTAGCGGGAAGAAAAAGCGGTTCATCAGATCAGCGTAATCCGGTTGAGTCGCCGGACAGTCTGCATTCAAAAGCGGAAGTGAGGATCCTGCTTGCGCTAGGTGAAGGGCCGTGGCCTGATATTCCCGCCGCAGACTTGCCGAAACGCGTATTGCTCGACGGCACGCCGATCCAGAATCAGGATGGCACGTTCAACATGGAAGGGATTAAGCTGGATTTTAGGCCAGGTACTGAAGACCAAACTTACATTCCTGGCGTTCCTGGCGTTGAATCTGAAACGGGTGTCGGTGTTGAACTGAAATACGGTGAAGGTGCGGCGTGGGTGCGTCAGATATCCAACACACAGATCGACGCCGTCAGGATCCGCATTGGCCTTGCTCGTCTTGTTCAGCAACTGGATAACGGTGATCGCGTCGGAGCGGTAGTTGATTACCGGATTGATCTGGCTGTCGGCGGCGGTTCGTATTCAACCGTTGTTAACGGTAAATTCGAAGGTAAAACGACAACGCTTTACGAGCGTGACCATCGTATTGATTTACCCGCGTCAAGCACTGGCTGGCGTGTTCGTGTCGTGCGACTGACACCGGATTCAACCACTGACATGCTGGTTAGTCAGACGCAGATCCAAGCTATCACGGAAATCGTTGATGTTAAGCTGACGTATCCGCACACCGTACTATTGTTCGCCTCATTCGATGCAAAATTATTCTCAAACATCCCGCCGATTTCAATTTTGTCTGAAGGTCGGGAGGTGCAGATACCGACGAATTACGATCCGGTTGCGAAGACGTATTCAGGGACATGGAACGGTGAATTTAAACGTGCGTGGACTGATAACCCAGCGTGGGTGATGTTCGACGCTGTGACGAATGAACGGTTCAGTATCGGTGACAAAATCCCAGCGTTCCTGATGGATAAATGGCAACTGTACCGGATTGCACAGCGTTGCGACGAACGGATACCGGACGGCGCAGGCGGTACAGAGGTTCGCTATAAATGTGACATCTACGTGCAAAGCAGGGTGCAGGCGTGGACGCTGATCCGCGATCTTTGCGCGATATTCTGCGGCATGTCGTACTGGGGAAACCAGATGCTGAATTTTATCAGCGATTCCCCATCTGACGCCGTGCAGGTTCTGACAAACGCTAACGTGGTTAACGGTCAGTTTGTTTACAAAGGCGGAAGCGTCAAAAATCGTCGATCCGTTGGCATGGTTAGTTACGACGATCCGGTAAACCACTACCAATCAAATGTGGCCGTGGTTCCGGTGCAAGAAATGGTTCAGCGATACGGTTACGATCAGGCGCTGGAGTTATCCGGTATTGGCTGCACTCGGTTGTCAGAAGCGCAGCGTAAGGCTCGTTACGGCGTGCTCACAAACGCGATGGATGAGCAGGTTTCTTTCGTGATCGGCATGGAAGGGATCGAGTTCATGCCGTGTGACGTGGTGGCGATTGCTGATGCTGAATTCAGCGGTGCGCAGACTGGCGGACGTGTTGAGCGTGATTCAACTGGACGAACAATTTATCTTGATCGGGCGATATCGGATGTTGTTGCCATTGGCGACACTATCATTATCCGCGCCGTAGGCCAGAAAGAGGCAGAGCGCCGGACTATCGCCGCCATTGCATCAGATCGCCGTAGCGTTACTGTTAGCGCAGACATTCCAACTGGTATCGCTGCATTCACGCCGTGGGTAATTGATTCGGCTAATCTGGCCGTACGGATGTTCCGCATCACGTCAGTAAAATGGAATGAAGCGGACAACACGTTTTCATGTTCCGGACTGATCTACAACGCAGACAAATATGATGCGGTGGATTCTGGCGCACGCCTTGATGATCGTCCTGTTTCTCTCATTCCATCAGCGATTGTGCCAGCGCCGACAAATCTTGCAATGGAACCGTATTACGTCATGAATCAGGGCGTGCGCACGGTGAGCATTTCGTTTACGTGGGATCGCGTTGACAAAGCAAGCCATTATGAAATGCAATGGCGGCGCGATAACAACGACTGGATTAACGTCCCGCGCCAGACGACGATGATCTACGATTTGAACGGCGTATTTTCCGGTGATTATCAATTCCGCGTGCGGGCGATATCAAATGTGGGAGAAATATCATCCGGCTGGGCAACGTCCGGAGTTGAAACGATTGAAGGGCGTGCAGGTGATGTTCCAGCGATCCCGTCATTCACAACCACGGCGCTGGTGTTCGGCGTGCGGCTGGACTGGTCATTCCCGAACGACGCAGAGGACACGAACAAAACCGAGATCCGCTATTCGATGAACGCCAATGGAACCGACGCAATGCATCTTTCTGATGTGGCGTACCCTGGCACCACGTATTCACAGATGGGGCTTAGCGTAGGCCAACGATTCTATTACAGCGCCAGATTAGTAGATAGACAAGGGAACATTGGGCCGTGGACGGCTTGGATTTCCGGTGAATCCAGTACGGACGTATCGGATATTTCCGATGCCATATTTGAGGATATCAAAAAGACTGACGGGTGGAAAGACCTGATCGGCGGTATGGGTGACGCGGCGACAATTTCCGCTGATGCTATGCGTTCAACAATCGAAACCGCTAAAGCGCTGCTGAAAAACACCTACGCTGACCTAGCAGAAACTCGCCGTTGGTTCGCGGAGAACGGCGCACGCAAGGCGGAAATCACCGAAACTCGACTGGTCATTGCTGACGAGGTTCAGGCGCTGGCGTTGCAGATGATAGAGCTTAAGGCGCAGATCGACGAGGAAGTCACCAGCCAGATAACCTCCCTTCAACAAACAGTCTCAACTCTTGCCGAAACTACCGCTCAAGATATCACTTCCCTTGAGTCCCGCATGGGCTCAGCAGAATCCGGCGTTAGCGCGAACGCTGGCGCGATTTCAGGACTGACCACTACTGTGACTAATCAGGGCGGGTTAATCACCGCTAACAGCCAGTCTATCGCGCAGATGACGGTGACTATCAACGGGTTTGAAACGTCGATAACCGACATCACCAATGTCACTAACGACATTAACGGCAACCTGAGCGCTTACCGGACGCTACGCATCAAGGCCAACGTTAACGGTGTGGATTATGTCGCCGGAACGACAACGGGCATTCAGAACACGGACACGGGCGTTAGATCGTATGTTAACTTCCTTGCTGACCAGTTCGCGATGCTGATTAACGTGAATGGCACGCCGACGCCGATCTTCACCAACGTTGGCACGCAGGTAATTTTGCGTTCGGCGGTGATTGGGGATGCGACGATAACCAGTGCGAAGATTGCCAACGGTGCAATCGGGAGACTACAGATAGCCGACAGTATCCAGTCGAATAACTATGCTCAGGGTTCAACGGGTATGAAGCTTGATTTTGCCAATGGCACATTAGAGCTTAACGGTAATGAACCAGGTCAGGGAAGAAAAACGATAGGTAATATTCGCGATGTGGTATACAACGAAAATAATCAGGTAGTGGTCGTAATAGGGAAAAGATTATGA

Tertiary structure

PDB ID
6c290a8b14a4d5c0b7486b17ef6f07cc2be2d336cad4482d47c222bcfc0ed2d7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7838
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel genus of Pectobacterium bacteriophages display broad host range by targeting several species of Danish soft rot isolates Pedersen,J.S., Carstens,A.B., Rothgard,M.M., Roy,C., Viry,A., Papudeshi,B., Kot,W., Hille,F., Franz,C.M.A.P., Edwards,R. and Hansen,L.H. 2024 38986742 GenBank