Phage RBP Database

Genbank accession

XSD87297.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,84

TF

Evidence RBPdetect2

Probability 0,97

Protein sequence

MAKNMITGSKGGSSKPHTPKELEDNLISINKIKILLAVSDGECDPDFSLKNLYLDDVVVQNEDGSFNYENVKAEFRPGTQDQDYIQGFTDTASEVTVARDLTTKTPFSISVTNKNLSAIRIKILMPRGVTSEDDGDLVGVRVEYAVDMAVDGGSFNQVLSDVIDGKTTSGYDRSRRIDLPSFNQQVILRVRRVTPDSTTAKVTDLIRLQSYAEVVDAKFRYPLTGLVYVEFDSELFPNQIPRISTKKRWKIINVPSNYDPIDRTYSGSWNGTFKKAWSNNPAWVLYDIITSQRYGLDQRELGIPIDKWSLYDVGRYCDQMVPDGKGGQEPRYLCDVVIQSQVEAFQLVTDICSIFRGMTFWNGESLSIVVDKPREPSYIFTNDNVVNGEFSYTFASEKSMYTSCNVTFDDEQNMYQQDVEPVFDTEAALRFGHNPTSITAIGCTRRSEANRRGRWILKTNLRSTTVNFATGLEGMIPTIGDVVAISDNFWSSNLTLNLSGRVMEVSGLQVFVPFKVDARAGDFIMINKPDGSPVKRTISRVSGDGKTLELNVGFGFDVKPDTVFAIERTDIALQKYVVTEITKGDSDEEFTYRVTAVQYDPNKYDEIDYGVNIDDRPTSIVDPDRLQAPKNVRLSSYSRVIQGVSVETMHVSWDKVEYASMYEMQWRKGNGNWHNTPQTANKETEVEGIYAGNYSVRVRAVSAGGSASPWSAIVNATLTGKVGEPGAPINLTASNDEVFGIRIKWGMPEGTEDTAYIELQQSETGKAESATLLSLVPYPQREYWHSILPAGYTNYYRVRSVDKIGNVSAWTNFVKGQSSIDLDDIVGDILDDILKSEGLKDLIEGAIDQSEKIQDAVESAKDSANKIKNQAQAIIENALATDTNLRWTRVENGKRKAEIGESFEMIATETEARIEAINKLRTEFDAGISAEITKVTKLISDETQARATQVNELKTEFTTEIGKTNAKVQQAQDAVTTETEARAQAIQNLDAKLTKQINDAKVELNANISRVDQAITDEAGARAEAVESLKAQYKKDISEAIKGAETEFNASIDRVNQAIANEEEARAQAVTSLDAKLTKQIGDTKKELGASIDRVDRAVTTEQQARAEAISGLDAKMTKLVGDTKTEINANVSRVDQAVASEAEARANADSALSTRIGDTQAALTQKMDSWVNAEQAGVMYGVNLGLKYKGKEYKAGMNLMLVGEGDNAKSQFLFSADRFAIIPSLSRGDLKTLPFVVENDQVFMQSTLIKDGTITNAKIGNEIRSNNFVDGSQGWRVGKDGSSQFNNVIVRGAVYANDGYFNGTVYANRIEGDVMIAESDTIPLKSVERFGSGDYEIFRINGENFDRQIDTNLIVWCSCSQRNHFRLIVQTPGKGDIEYYYLDTGNEGGGRAFALRGFFIPAAGRGQQNRIIVRVQESRNSTIKTYTPWVEREMGQKYNDVPNSSINNRNFIREKTYIAAYRAGRRIIA

Physico‐chemical properties

protein length:	1470 AA
molecular weight:	163161,52830 Da
isoelectric point:	5,04443
aromaticity:	0,08231
hydropathy:	-0,44395

Domain architecture

XSD87297.1

1 1470 aa

ATT 92–217 · ATT 341–495 · STR 627–722 · STR 724–816 · RBD 1163–1300 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171

IPR055385
ATT

IPR055385 IPR032876 IPR013783 IPR013783 Coil IPR015406

IPR036116
STR

IPR036116

IPR003961
STR

IPR003961

IPR003961
STR

IPR003961

XSD87297.1

11470 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0129
STR

DC_0129 DC_2322 DC_1904

DC_0738
STR

DC_0738

XSD87297.1

11470 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	2	1318	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	92	217	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	341	495	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR013783	STR	IPR013783	627	722	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR036116	STR	IPR036116	627	716	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR003961	STR	DC_0003	628	717	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	628	722	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR013783	STR	IPR013783	724	816	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
Coil	Unmapped	-	850	877	Coils	Coil	-	-	-	-
IPR015406	RBD	DC_0135	1163	1300	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XSD87297.1

1 1470 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	1412	1412	0,8806
Central domain	1413	1459	48	0,5397
C-terminal	1460	1470	10	0,6836

Note: Constraints were applied during segmentation.
Fixed 36 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage vB_Kpn_K50_evo26 [NCBI] · taxon 3412915

Viruses

Host

Klebsiella pneumoniae [NCBI] · taxon 573

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

XSD87297.1 [NCBI]

Genbank nucleotide accession

PQ569666.1 [NCBI]

CDS location

range 16651 -> 21063
strand +

CDS

ATGGCAAAAAATATGATAACCGGGAGTAAAGGCGGTTCCTCAAAGCCTCATACTCCAAAAGAGTTGGAGGATAACCTGATTTCAATTAACAAAATCAAGATCTTGCTCGCGGTTTCAGATGGCGAGTGCGACCCTGATTTTTCGTTAAAGAATCTATATCTTGACGACGTTGTTGTTCAGAACGAGGACGGCTCATTTAACTATGAGAATGTCAAGGCTGAATTTAGACCAGGCACGCAGGATCAGGACTACATCCAAGGCTTTACTGACACTGCAAGCGAAGTGACCGTTGCGCGAGACCTGACAACAAAGACGCCGTTTAGCATTTCAGTAACGAACAAAAACCTGTCCGCGATCCGCATCAAGATTCTGATGCCGCGAGGCGTTACCAGTGAAGATGATGGCGATCTGGTTGGTGTTCGCGTTGAGTATGCGGTTGATATGGCGGTTGATGGCGGATCGTTTAATCAAGTGTTAAGCGACGTTATCGACGGTAAGACGACAAGCGGTTATGACCGCAGCCGTCGAATCGACTTACCAAGCTTTAACCAGCAGGTAATTTTACGAGTTCGTCGTGTTACTCCTGACAGCACAACAGCGAAGGTTACGGATCTAATCCGATTGCAGAGCTACGCCGAAGTCGTCGATGCGAAGTTCCGTTATCCTCTGACTGGTCTTGTTTATGTTGAGTTCGACTCTGAATTGTTCCCAAACCAGATCCCTCGAATCTCAACAAAGAAACGGTGGAAGATAATCAACGTCCCAAGCAACTATGATCCTATTGACAGGACTTATAGCGGATCTTGGAACGGTACGTTTAAAAAGGCGTGGAGCAATAACCCTGCATGGGTTCTTTATGACATTATCACCAGTCAGCGCTATGGATTAGATCAGCGTGAGTTGGGGATCCCTATCGACAAATGGAGCCTTTACGATGTAGGGCGCTATTGCGATCAGATGGTTCCAGATGGAAAGGGCGGGCAGGAGCCGCGCTATCTGTGCGATGTTGTGATTCAAAGCCAGGTTGAGGCGTTCCAGCTTGTGACTGACATTTGCTCAATCTTCCGGGGAATGACTTTCTGGAATGGCGAAAGCCTTTCGATTGTGGTTGATAAGCCGCGCGAGCCGTCTTACATCTTCACAAACGACAACGTTGTTAACGGCGAGTTTTCTTACACGTTCGCCAGCGAAAAGAGCATGTACACATCATGTAACGTGACCTTTGACGATGAGCAGAACATGTATCAACAAGACGTTGAGCCAGTTTTCGACACGGAGGCCGCTTTACGGTTTGGACACAATCCAACAAGCATAACCGCTATCGGGTGCACACGACGCAGCGAGGCAAACCGCCGGGGCCGCTGGATCCTGAAAACCAACTTGCGCAGCACAACGGTTAACTTCGCAACCGGACTTGAAGGTATGATCCCGACAATCGGCGACGTTGTGGCAATCTCGGACAACTTCTGGAGCAGCAACCTAACTCTCAACCTATCCGGTCGAGTGATGGAGGTTAGCGGTCTGCAAGTTTTCGTGCCGTTTAAGGTTGACGCACGCGCTGGTGACTTCATCATGATCAACAAGCCTGACGGCTCGCCAGTTAAGCGCACCATATCGCGCGTAAGCGGCGACGGTAAGACTTTGGAGCTTAACGTAGGGTTTGGCTTTGACGTAAAACCGGATACCGTATTTGCGATTGAGCGCACTGATATAGCGCTTCAAAAATACGTTGTAACGGAGATAACGAAAGGCGATAGCGATGAGGAGTTTACCTATCGTGTAACGGCTGTTCAGTATGACCCGAACAAGTACGATGAGATCGACTATGGCGTAAACATTGATGATCGACCAACGTCGATTGTTGACCCTGACAGACTGCAAGCGCCTAAAAACGTTCGCTTGTCGTCTTACTCTCGCGTTATCCAGGGCGTAAGCGTGGAAACAATGCACGTTAGCTGGGATAAGGTCGAATATGCGTCAATGTACGAAATGCAGTGGCGAAAAGGCAATGGCAACTGGCACAACACGCCGCAGACGGCGAACAAAGAAACGGAAGTTGAAGGCATTTATGCAGGCAACTACTCAGTGCGAGTTCGCGCAGTATCCGCGGGCGGGAGTGCGTCTCCGTGGTCAGCGATTGTTAACGCTACTCTGACCGGGAAAGTTGGCGAGCCTGGCGCGCCTATTAACCTGACTGCATCTAATGATGAAGTTTTTGGCATTAGAATCAAATGGGGTATGCCGGAAGGCACGGAGGACACCGCATACATTGAGTTGCAGCAATCTGAAACCGGAAAGGCTGAATCAGCAACTTTGTTGAGTTTGGTTCCGTATCCGCAGCGCGAATACTGGCACAGCATTTTGCCTGCTGGTTATACCAACTACTATCGCGTAAGGTCGGTGGATAAGATCGGCAACGTGTCGGCCTGGACTAACTTTGTTAAAGGTCAATCCTCAATCGATCTTGACGATATCGTTGGCGACATTTTAGACGACATTCTTAAAAGCGAAGGCTTAAAAGATTTGATCGAGGGAGCCATTGATCAATCAGAAAAGATTCAAGATGCGGTTGAATCAGCCAAAGACTCGGCCAACAAGATTAAGAATCAGGCGCAAGCGATTATCGAAAACGCTCTTGCAACCGATACTAATCTGCGATGGACACGAGTAGAAAACGGCAAGCGAAAAGCCGAGATCGGGGAGTCATTCGAAATGATAGCCACCGAGACGGAAGCCAGGATTGAAGCCATAAACAAGCTTAGGACTGAATTCGACGCCGGAATCAGCGCGGAGATAACCAAAGTAACGAAGCTTATCTCTGATGAGACTCAGGCGCGAGCGACTCAGGTTAACGAGCTTAAAACAGAGTTCACGACCGAGATCGGAAAGACCAACGCCAAAGTGCAGCAGGCTCAGGATGCGGTAACAACCGAGACGGAAGCAAGGGCGCAAGCAATCCAGAATCTTGACGCGAAGCTAACCAAGCAGATTAATGATGCGAAAGTTGAGCTAAACGCCAATATCAGCAGGGTTGACCAGGCGATTACGGATGAAGCCGGGGCGCGAGCGGAGGCGGTAGAATCGCTTAAAGCTCAGTATAAAAAGGACATTAGCGAAGCCATAAAAGGCGCGGAGACTGAATTTAACGCGAGCATTGATAGAGTCAACCAAGCCATAGCCAACGAGGAAGAGGCGCGTGCTCAGGCCGTAACAAGCCTTGACGCGAAGCTAACGAAACAGATTGGCGACACGAAAAAAGAGCTTGGTGCATCAATCGACCGGGTAGATCGGGCAGTCACTACCGAGCAGCAAGCGCGAGCGGAAGCGATTTCTGGTCTTGACGCGAAAATGACAAAACTTGTCGGAGATACAAAGACTGAAATTAACGCTAATGTCAGTCGAGTTGATCAGGCGGTTGCAAGTGAGGCGGAGGCGAGAGCTAACGCTGACTCGGCGTTAAGCACAAGGATCGGAGATACTCAGGCTGCATTAACTCAGAAAATGGATTCATGGGTTAACGCGGAGCAAGCTGGCGTTATGTACGGCGTAAACCTTGGCCTCAAGTATAAGGGCAAGGAGTACAAGGCCGGGATGAACTTAATGCTTGTTGGTGAGGGTGACAACGCAAAATCTCAGTTCCTGTTTAGCGCTGATCGGTTTGCTATCATTCCATCGTTAAGCCGTGGCGATCTTAAAACGCTGCCGTTTGTTGTTGAAAATGATCAGGTGTTCATGCAATCGACGCTGATTAAAGACGGCACGATCACAAACGCGAAGATTGGAAATGAGATCCGCTCAAACAATTTTGTTGATGGTTCTCAAGGCTGGCGTGTTGGCAAGGATGGCAGTTCGCAGTTCAATAACGTTATCGTTCGCGGAGCGGTTTACGCTAATGATGGCTACTTTAACGGCACCGTTTACGCTAACCGCATCGAGGGCGACGTGATGATCGCAGAGTCTGACACGATACCGCTCAAGAGCGTTGAGCGCTTTGGAAGCGGCGACTATGAGATTTTCAGAATTAACGGGGAGAACTTTGATCGACAAATCGACACAAACCTTATCGTCTGGTGTTCTTGCTCTCAGCGAAACCACTTCCGCTTGATTGTGCAAACTCCAGGTAAGGGCGATATTGAATATTATTATCTTGACACTGGTAACGAAGGTGGTGGTAGGGCGTTTGCTTTGCGCGGATTCTTCATTCCGGCAGCGGGCAGAGGGCAGCAAAACAGGATCATTGTTAGGGTTCAGGAAAGCCGAAACTCAACAATCAAGACTTACACACCTTGGGTTGAAAGGGAAATGGGCCAGAAGTACAACGATGTTCCTAACTCCTCCATTAACAACCGAAACTTCATTCGTGAAAAAACCTATATTGCAGCATACCGAGCAGGTCGCCGCATTATAGCGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)