Protein

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Genbank accession
AYP28532.1 [GenBank]
Protein name
major tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,82
Protein sequence
MADRKLTHFKFFYNTPLTDYQNTIHFSSNNERDNYFLNENHFNAIDYKNIPFNFIRDRNMVNLEQMSWQDAQGINYCTFKSDFENRRYYAFVNQIEYVNDHVTRMYLVIDTVMTYTQGNVLSQVQNAFVERQHLPREVYNYLLPSLRNNDDVIKASNKYYLNNYLEQFGGNLVLFQSSADLSKKFGTKKEPNLESSKGITYDYITSPVNLYVMNRKDFNEFMDKMSKYPWITQNFQKIILIPATFINIDDLESVKTQEDIKGLMTLKNEKLSNEWELKELRVPFERLQYMINANQDELKHLVRNEYLTIEIYSWNGDSLLLDAGKITEKTGVKLRTKSIIGYHNEVRIYPVDYNSAPNEKPIKASDNSILIDTGSFLNTAITFDSFAEVPILIDNGLLAQSQQANKQKNAQSNLISNRINNVVGGNDLKSRFYDAVSIGSNLSPTALFSKFNDEYNYYKELRAEYKDLALQPPTVTSSEMGNAFQIANSINGLTMKIGVPAPFDMDNIKRYYFMLGFETNDQAGTPFPIDSWTVCNYLRMRGTYTIDGIDPMLLEQLKVLLETGVRFWHNDGTNNPMAQNVFKNKFRK
Physico‐chemical
properties
protein length:588 AA
molecular weight: 68359,37570 Da
isoelectric point:5,88843
aromaticity:0,12585
hydropathy:-0,52160

Domains

Domains [InterPro]
IPR031772
TAS
5–118
IPR031772
IPR031772
TAS
5–115
IPR031772
DC_0080
STR
87–431
DC_0080
AYP28532.1
1 588
Architecture
TAS
STR
TAS 5-86 | STR 87-431 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage JBug18
[NCBI] 		2483712 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP28532.1 [NCBI]
Genbank nucleotide accession
MH972263 [NCBI]
CDS location
range 9244 -> 11010
strand -
CDS
ATGGCAGATAGAAAACTGACACATTTTAAATTTTTCTATAATACACCACTGACAGATTATCAAAACACAATTCACTTTTCATCAAACAATGAACGTGACAACTATTTTTTAAATGAAAATCATTTTAATGCGATTGATTATAAAAATATTCCTTTTAATTTTATACGTGATAGAAACATGGTGAATCTTGAACAAATGTCATGGCAAGACGCACAGGGGATTAATTACTGTACGTTTAAATCTGATTTTGAAAATAGACGTTATTATGCGTTTGTGAATCAAATTGAGTATGTCAACGACCATGTGACACGAATGTATTTAGTCATTGATACAGTGATGACTTACACACAGGGTAATGTATTATCTCAAGTACAAAATGCTTTTGTTGAACGTCAACACCTGCCACGTGAGGTCTATAATTATTTGTTACCGTCACTGAGAAATAATGATGATGTTATTAAAGCCAGTAACAAATACTATTTAAATAATTATCTTGAACAGTTTGGTGGTAATCTTGTTTTATTCCAATCAAGTGCTGATTTATCTAAAAAGTTTGGGACTAAAAAAGAACCAAACTTAGAATCTTCAAAAGGGATTACGTATGATTACATTACAAGTCCAGTGAATCTGTATGTGATGAATCGTAAAGACTTTAACGAATTTATGGATAAAATGAGTAAATATCCATGGATTACGCAAAACTTTCAAAAAATTATTTTAATACCTGCTACATTTATTAATATTGATGATTTAGAATCAGTAAAAACGCAAGAAGATATTAAAGGATTAATGACACTTAAAAATGAAAAGTTATCGAATGAATGGGAATTAAAAGAATTACGTGTGCCTTTTGAAAGATTACAATATATGATTAATGCTAATCAAGATGAATTAAAACATCTTGTAAGAAATGAATATTTAACAATTGAAATTTATTCATGGAATGGTGACAGTTTATTACTTGACGCAGGAAAAATTACAGAAAAAACAGGGGTTAAGTTAAGAACAAAATCTATTATTGGTTATCATAATGAGGTACGTATTTATCCCGTTGACTATAATAGTGCACCTAATGAAAAACCAATCAAAGCAAGTGATAATTCAATATTAATAGATACAGGTTCATTCTTAAATACTGCTATTACATTTGATAGCTTTGCTGAAGTACCTATTTTGATTGATAATGGATTACTTGCTCAATCACAACAAGCTAATAAACAAAAAAATGCACAAAGTAATTTAATTTCAAATAGAATCAATAATGTTGTGGGTGGTAATGATTTAAAATCAAGATTTTATGATGCTGTAAGCATTGGATCAAATCTTTCACCAACGGCATTATTTTCAAAATTTAATGATGAATATAATTACTATAAAGAATTAAGAGCAGAATATAAGGATTTAGCATTACAACCACCAACAGTAACAAGTTCAGAAATGGGAAATGCGTTCCAAATCGCAAATAGTATTAATGGATTAACAATGAAAATTGGTGTACCCGCGCCCTTCGACATGGATAATATTAAACGTTATTATTTCATGTTAGGTTTTGAAACGAACGACCAAGCAGGAACACCATTCCCAATTGATTCATGGACGGTATGCAATTATTTAAGAATGAGAGGGACATATACCATTGACGGAATTGACCCTATGCTTTTAGAACAATTAAAAGTATTACTTGAAACGGGTGTAAGATTTTGGCACAACGACGGAACGAACAATCCAATGGCACAAAATGTATTTAAAAATAAATTTAGAAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
ca16c6ffa080fbe430829185c44eb83babd4cdc984cb7b73b592ceb5a8036c85
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3821
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences of Staphylococcus podophages JBug18, Pike, Pontiff, and Pabna Kriznik,J., Hernandez,A. and Hatoum-Aslan,A. — — GenBank