Protein

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Genbank accession
AFD02876.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,53
Protein sequence
MSTLNVNELHASSLQNFEKNFDDREALIVAGTCNMSALGQLSLPTGTTAQRPSSPSVGMIRFNSELLQVEVWNGNSWLQVIRASAGGNDGGTPATAASSVQELMDAGVASDGNYYLNFDGTTRRYFVPINSHPYYLLIGNWGGGGAAFFSNASSLSGQNLNDTGDSTPTGSFASNSTWGYYRNASGSDFKYATFSNRGVSYRYVKMRMNLYNYYSNDGQNGRNFLNISSGVGDGLTIMRDNSGSGDGQHIFTYYTAISNNDSNSCPSVAGTQPTHVAGGNNPGGFMGNRYTCFSRSGSSYTSEYVRNFTVQAGDNSGGTGPNVINGDAWFTVDLGTTYSDNMHIVIHSDQDTGNEDTYLKRGCVLVRPA
Physico‐chemical
properties
protein length:369 AA
molecular weight: 39561,55530 Da
isoelectric point:5,16515
aromaticity:0,11111
hydropathy:-0,46016

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AFD02876.1
1 369 aa
Domain Start End Length (AA) Confidence
N-terminal 1 81 81 0,9113
Central domain 82 280 200 0,0105
C-terminal 281 369 88 0,9968
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Synechococcus phage metaG-MbCM1 [NCBI] · taxon 1079999
Uroviricota Caudoviricetes Pantevenvirales Galenevirus Galenevirus mbcm1
Host
Synechococcus [NCBI] · taxon 1129
cellular organisms Bacteria Bacillati Cyanobacteriota/Melainabacteria group Cyanobacteriota Cyanophyceae

Coding sequence (CDS)

Genbank protein accession
AFD02876.1 [NCBI]
Genbank nucleotide accession
JN371769.1 [NCBI]
CDS location
range 28416 -> 29525
strand +
CDS
ATGAGTACTCTAAACGTTAACGAACTACACGCATCTTCGCTGCAGAACTTCGAGAAGAACTTCGATGATCGTGAAGCATTGATCGTTGCAGGTACATGTAATATGAGTGCATTGGGTCAACTAAGTTTACCTACAGGAACTACAGCACAAAGACCTTCAAGTCCCTCTGTAGGCATGATTAGGTTCAATAGTGAATTATTACAAGTAGAAGTTTGGAATGGTAACTCATGGTTACAAGTAATCAGAGCATCTGCAGGTGGTAATGATGGTGGAACCCCTGCTACAGCAGCGTCTAGTGTTCAAGAACTCATGGATGCAGGTGTTGCTTCAGATGGAAACTATTACTTAAACTTTGATGGTACAACTCGTAGATACTTTGTACCTATCAATAGTCATCCTTATTATCTTCTTATAGGTAACTGGGGTGGCGGTGGTGCTGCATTCTTTAGTAATGCATCATCATTATCAGGACAGAACTTAAATGATACGGGCGATTCAACTCCTACGGGTAGTTTTGCTTCTAACAGTACTTGGGGTTACTACAGAAACGCAAGTGGATCTGACTTTAAATATGCAACCTTTAGTAATAGGGGTGTATCATATCGTTATGTCAAGATGAGAATGAATCTTTATAACTACTATTCTAATGATGGTCAGAACGGTAGAAACTTCCTAAATATTTCGTCGGGAGTTGGTGATGGTCTAACTATCATGCGTGACAACTCTGGTTCAGGTGATGGACAACACATCTTTACTTACTATACTGCTATCTCTAACAATGATAGTAACTCTTGCCCATCAGTAGCAGGAACTCAACCTACACACGTTGCAGGTGGTAACAACCCAGGTGGATTCATGGGTAACAGATATACATGTTTCTCTAGATCTGGATCTAGTTACACTTCAGAATATGTGAGAAACTTTACTGTACAGGCAGGAGACAATTCTGGTGGTACAGGTCCAAACGTAATTAATGGTGATGCATGGTTCACTGTTGACTTAGGAACAACTTACAGTGACAACATGCATATCGTCATACACTCAGATCAAGACACTGGAAACGAAGATACATACCTTAAGAGAGGTTGTGTACTTGTTCGACCTGCATAA

Genome Context

Tertiary structure

AFD02876.1
ESMFold structure
Source ESMFold
pLDDT 39.6
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Viral Tagging: a high-throughput approach to explore virus-host interactions Deng,L., Sullivan,M.B., Poulos,B. and Ignacio Espinoza,J.C. 2019-08-05 — GenBank