Protein

View in Explore
Genbank accession
AFD02876.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MSTLNVNELHASSLQNFEKNFDDREALIVAGTCNMSALGQLSLPTGTTAQRPSSPSVGMIRFNSELLQVEVWNGNSWLQVIRASAGGNDGGTPATAASSVQELMDAGVASDGNYYLNFDGTTRRYFVPINSHPYYLLIGNWGGGGAAFFSNASSLSGQNLNDTGDSTPTGSFASNSTWGYYRNASGSDFKYATFSNRGVSYRYVKMRMNLYNYYSNDGQNGRNFLNISSGVGDGLTIMRDNSGSGDGQHIFTYYTAISNNDSNSCPSVAGTQPTHVAGGNNPGGFMGNRYTCFSRSGSSYTSEYVRNFTVQAGDNSGGTGPNVINGDAWFTVDLGTTYSDNMHIVIHSDQDTGNEDTYLKRGCVLVRPA
Physico‐chemical
properties
protein length:369 AA
molecular weight: 39561,55530 Da
isoelectric point:5,16515
aromaticity:0,11111
hydropathy:-0,46016

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFD02876.1
1 369
Domain Start End Length (AA) Confidence
N-terminal 1 81 81 0,9113
Central domain 82 280 200 0,0105
C-terminal 281 369 88 0,9968
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-81
Central
82-280
C-terminal
281-369

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage metaG-MbCM1
[NCBI] 		1079999 Uroviricota > Caudoviricetes > Pantevenvirales > Galenevirus > Galenevirus mbcm1
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFD02876.1 [NCBI]
Genbank nucleotide accession
JN371769.1 [NCBI]
CDS location
range 28416 -> 29525
strand +
CDS
ATGAGTACTCTAAACGTTAACGAACTACACGCATCTTCGCTGCAGAACTTCGAGAAGAACTTCGATGATCGTGAAGCATTGATCGTTGCAGGTACATGTAATATGAGTGCATTGGGTCAACTAAGTTTACCTACAGGAACTACAGCACAAAGACCTTCAAGTCCCTCTGTAGGCATGATTAGGTTCAATAGTGAATTATTACAAGTAGAAGTTTGGAATGGTAACTCATGGTTACAAGTAATCAGAGCATCTGCAGGTGGTAATGATGGTGGAACCCCTGCTACAGCAGCGTCTAGTGTTCAAGAACTCATGGATGCAGGTGTTGCTTCAGATGGAAACTATTACTTAAACTTTGATGGTACAACTCGTAGATACTTTGTACCTATCAATAGTCATCCTTATTATCTTCTTATAGGTAACTGGGGTGGCGGTGGTGCTGCATTCTTTAGTAATGCATCATCATTATCAGGACAGAACTTAAATGATACGGGCGATTCAACTCCTACGGGTAGTTTTGCTTCTAACAGTACTTGGGGTTACTACAGAAACGCAAGTGGATCTGACTTTAAATATGCAACCTTTAGTAATAGGGGTGTATCATATCGTTATGTCAAGATGAGAATGAATCTTTATAACTACTATTCTAATGATGGTCAGAACGGTAGAAACTTCCTAAATATTTCGTCGGGAGTTGGTGATGGTCTAACTATCATGCGTGACAACTCTGGTTCAGGTGATGGACAACACATCTTTACTTACTATACTGCTATCTCTAACAATGATAGTAACTCTTGCCCATCAGTAGCAGGAACTCAACCTACACACGTTGCAGGTGGTAACAACCCAGGTGGATTCATGGGTAACAGATATACATGTTTCTCTAGATCTGGATCTAGTTACACTTCAGAATATGTGAGAAACTTTACTGTACAGGCAGGAGACAATTCTGGTGGTACAGGTCCAAACGTAATTAATGGTGATGCATGGTTCACTGTTGACTTAGGAACAACTTACAGTGACAACATGCATATCGTCATACACTCAGATCAAGACACTGGAAACGAAGATACATACCTTAAGAGAGGTTGTGTACTTGTTCGACCTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8608cfe481891b601aac2e7439aeff2c29241da61ee0e3aaa8b892379e7eeb28
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3962
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Viral Tagging: a high-throughput approach to explore virus-host interactions Deng,L., Sullivan,M.B., Poulos,B. and Ignacio Espinoza,J.C. 2019-08-05 — GenBank