Protein

View in Explore
Genbank accession
AFD02876.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,53
Seq2Symm
C3 confidence 0,867
C3 0,867
C1 0,249
C2 0,003
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MSTLNVNELHASSLQNFEKNFDDREALIVAGTCNMSALGQLSLPTGTTAQRPSSPSVGMIRFNSELLQVEVWNGNSWLQVIRASAGGNDGGTPATAASSVQELMDAGVASDGNYYLNFDGTTRRYFVPINSHPYYLLIGNWGGGGAAFFSNASSLSGQNLNDTGDSTPTGSFASNSTWGYYRNASGSDFKYATFSNRGVSYRYVKMRMNLYNYYSNDGQNGRNFLNISSGVGDGLTIMRDNSGSGDGQHIFTYYTAISNNDSNSCPSVAGTQPTHVAGGNNPGGFMGNRYTCFSRSGSSYTSEYVRNFTVQAGDNSGGTGPNVINGDAWFTVDLGTTYSDNMHIVIHSDQDTGNEDTYLKRGCVLVRPA
Physico‐chemical
properties
protein length:369 AA
molecular weight: 39561,55530 Da
isoelectric point:5,16515
aromaticity:0,11111
hydropathy:-0,46016

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AFD02876.1
1 369 aa
Domain Start End Length (AA) Confidence
N-terminal 1 81 81 0,9113
Central domain 82 280 200 0,0105
C-terminal 281 369 88 0,9968
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Synechococcus phage metaG-MbCM1 [NCBI] · taxon 1079999
Uroviricota Caudoviricetes Pantevenvirales Galenevirus Galenevirus mbcm1
Host
Synechococcus [NCBI] · taxon 1129
cellular organisms Bacteria Bacillati Cyanobacteriota/Melainabacteria group Cyanobacteriota Cyanophyceae

Coding sequence (CDS)

Genbank protein accession
AFD02876.1 [NCBI]
Genbank nucleotide accession
JN371769.1 [NCBI]
CDS location
range 28416 -> 29525
strand +
CDS
ATGAGTACTCTAAACGTTAACGAACTACACGCATCTTCGCTGCAGAACTTCGAGAAGAACTTCGATGATCGTGAAGCATTGATCGTTGCAGGTACATGTAATATGAGTGCATTGGGTCAACTAAGTTTACCTACAGGAACTACAGCACAAAGACCTTCAAGTCCCTCTGTAGGCATGATTAGGTTCAATAGTGAATTATTACAAGTAGAAGTTTGGAATGGTAACTCATGGTTACAAGTAATCAGAGCATCTGCAGGTGGTAATGATGGTGGAACCCCTGCTACAGCAGCGTCTAGTGTTCAAGAACTCATGGATGCAGGTGTTGCTTCAGATGGAAACTATTACTTAAACTTTGATGGTACAACTCGTAGATACTTTGTACCTATCAATAGTCATCCTTATTATCTTCTTATAGGTAACTGGGGTGGCGGTGGTGCTGCATTCTTTAGTAATGCATCATCATTATCAGGACAGAACTTAAATGATACGGGCGATTCAACTCCTACGGGTAGTTTTGCTTCTAACAGTACTTGGGGTTACTACAGAAACGCAAGTGGATCTGACTTTAAATATGCAACCTTTAGTAATAGGGGTGTATCATATCGTTATGTCAAGATGAGAATGAATCTTTATAACTACTATTCTAATGATGGTCAGAACGGTAGAAACTTCCTAAATATTTCGTCGGGAGTTGGTGATGGTCTAACTATCATGCGTGACAACTCTGGTTCAGGTGATGGACAACACATCTTTACTTACTATACTGCTATCTCTAACAATGATAGTAACTCTTGCCCATCAGTAGCAGGAACTCAACCTACACACGTTGCAGGTGGTAACAACCCAGGTGGATTCATGGGTAACAGATATACATGTTTCTCTAGATCTGGATCTAGTTACACTTCAGAATATGTGAGAAACTTTACTGTACAGGCAGGAGACAATTCTGGTGGTACAGGTCCAAACGTAATTAATGGTGATGCATGGTTCACTGTTGACTTAGGAACAACTTACAGTGACAACATGCATATCGTCATACACTCAGATCAAGACACTGGAAACGAAGATACATACCTTAAGAGAGGTTGTGTACTTGTTCGACCTGCATAA

Genome Context

Tertiary structure

AFD02876.1
ESMFold structure
Source ESMFold
pLDDT 39.6
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Viral Tagging: a high-throughput approach to explore virus-host interactions Deng,L., Sullivan,M.B., Poulos,B. and Ignacio Espinoza,J.C. 2019-08-05 — GenBank