Phage RBP Database

Genbank accession

YP_009639175.1 [GenBank]

Protein name

tail assembly protein

RBP type

TF

Evidence RBPdetect

Probability 0,80

TF

Evidence RBPdetect2

Probability 0,96

Seq2Symm

C3 confidence 0,937

C3	0,937
C1	0,675
C6	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAQVVVAQRMWQRRDTAANWSAKNPILAAGEIGVQLGATSDETKFKIGDGATPWNSLSFFEGRLIEIGTGGGYIRWRYVGDADWINLVSLESLRGPAGANGAQGPQGLSAYQVAVANGFAGTQAEWLASLKGEKGDQGDQGPPGIPSQRRIQRITNTDSGSIVCDWNSYDEIRVTLTADTLVNMTGALDGQGCVLLLKQGGVGGHGVSFGSNVRFNNLIPIYNPTTTAGKSDRLGFVYDDDAGFYDVQAIVDGI

Physico‐chemical properties

protein length:	254 AA
molecular weight:	26960,71660 Da
isoelectric point:	4,81838
aromaticity:	0,08661
hydropathy:	-0,20787

Domain architecture

YP_009639175.1

1 254 aa

ATT 9–52 · STR 53–141 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

SSF69349
STR

SSF69349

IPR041352
ATT

IPR041352

YP_009639175.1

1254 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1473
STR

DC_1473

YP_009639175.1

1254 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
SSF69349	STR	SSF69349	9	141	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
IPR041352	ATT	DC_0533	13	52	InterPro cluster	Major tropism determinant, N-terminal domain	Central	Medium	Text match	295 proteins / 296 hits

Proteins with similar domain architecture

Phage

Xylella phage Salvo [NCBI] · taxon 1415147

Uroviricota Caudoviricetes Casjensviridae Salvovirus salvo

Host

Xylella fastidiosa [NCBI] · taxon 2371

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Lysobacterales

Genbank protein accession

YP_009639175.1 [NCBI]

Genbank nucleotide accession

NC_042345 [NCBI]

CDS location

range 22098 -> 22862
strand -

CDS

ATGGCACAGGTAGTCGTTGCACAACGCATGTGGCAGCGCCGCGACACTGCGGCGAATTGGTCTGCCAAGAATCCGATCCTCGCGGCCGGCGAGATTGGCGTGCAGCTCGGCGCTACTTCGGACGAGACCAAGTTCAAGATCGGCGACGGCGCGACCCCGTGGAACTCGCTGTCGTTCTTCGAGGGCCGGCTCATCGAAATCGGCACGGGCGGCGGTTACATCCGCTGGCGCTACGTGGGCGACGCCGACTGGATCAATCTGGTCTCGCTCGAATCACTGCGCGGCCCGGCTGGTGCGAATGGCGCGCAAGGCCCGCAAGGGTTGAGTGCATATCAGGTCGCCGTCGCCAACGGGTTCGCCGGCACGCAGGCCGAATGGCTCGCATCGCTGAAAGGCGAGAAGGGCGATCAAGGCGACCAAGGCCCGCCCGGCATTCCGTCGCAGCGTCGTATCCAGCGCATCACGAATACCGACAGCGGCTCCATCGTGTGCGACTGGAACTCCTACGACGAAATCCGCGTGACGCTGACCGCCGACACGCTCGTCAACATGACGGGTGCGCTTGACGGTCAGGGCTGCGTGCTGCTGCTGAAGCAAGGCGGCGTCGGCGGTCACGGCGTTTCGTTCGGCAGTAACGTGCGCTTCAACAACCTCATCCCGATCTACAACCCGACAACGACTGCCGGCAAGTCCGACAGGCTCGGTTTCGTCTACGACGACGACGCGGGCTTCTACGACGTGCAAGCAATCGTGGATGGAATCTAA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)