Phage RBP Database

Genbank accession

YP_009882658.1 [GenBank]

Protein name

tail collar fiber protein

RBP type

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,92

Seq2Symm

C3 confidence 0,437

C3	0,437
D3	0,042
C1	0,006

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSDKKFCAILTRAGEEAMTRAAVTGEPVGFSVMAVGDGGGVSAIPDPLQTGLINEVWRAPLNRVVIADQQANVIRAEMIMLPQVGGFWLREAALYDDEGVCLAVANMAPTYKPLLAEGSGRLQSVNMWIAVSNTASVNLITDPCIILATVSEVERAKNDVKDYTDKIVGQLDTDIQQVIADAITEAKRNFWEDDNPVGTTRFFNQNVNPNEKWPWSEWVYTGENKTIRVGKADGSNVGTTGGSDNVTIQQANLPAVQVNVSGETSELPRQELTTRGAGRHKHKGGMLAPGDVWDDNYIVGSDNDSRRTRNYTDEVADHSHIVDLPAHKHTTTGKTDNLGEGKSINVVESHTLLMCWSRVA

Physico‐chemical properties

protein length:	360 AA
molecular weight:	39144,39920 Da
isoelectric point:	4,97412
aromaticity:	0,05833
hydropathy:	-0,33667

Domain architecture

YP_009882658.1

1 360 aa

ATT 4–149 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR051934
Unmapped

IPR051934

IPR022225
ATT

IPR022225

YP_009882658.1

1360 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0386
STR

DC_0386

YP_009882658.1

1360 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR051934	Unmapped	-	3	163	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
IPR022225	ATT	DC_0271	4	149	InterPro cluster	Phage tail fibre protein, N-terminal domain	Central	Medium	Text match	271 proteins / 271 hits

Proteins with similar domain architecture

Phage

Klebsiella phage ST13-OXA48phi12.1 [NCBI] · taxon 2510464

Uroviricota Caudoviricetes Peduoviridae Dagavirus ST13OXA48phi121

Host

Klebsiella pneumoniae [NCBI] · taxon 573

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

YP_009882658.1 [NCBI]

Genbank nucleotide accession

NC_049453 [NCBI]

CDS location

range 13515 -> 14597
strand -

CDS

GTGAGCGATAAAAAATTCTGTGCCATCCTCACGCGCGCCGGTGAGGAAGCGATGACCCGTGCGGCAGTCACTGGGGAGCCGGTGGGATTCTCTGTGATGGCCGTAGGGGATGGTGGCGGCGTATCGGCTATACCTGACCCCCTACAAACCGGGTTAATCAACGAGGTATGGCGTGCCCCCCTGAATCGCGTGGTGATAGCAGACCAGCAGGCCAACGTTATTCGCGCGGAAATGATTATGCTGCCGCAGGTCGGCGGTTTCTGGCTAAGAGAGGCTGCACTGTATGACGACGAGGGGGTTTGTCTCGCCGTCGCGAACATGGCACCGACCTATAAGCCGCTACTGGCAGAGGGGTCAGGCAGGTTGCAATCCGTCAATATGTGGATTGCCGTCAGTAATACCGCCAGCGTCAATCTAATCACTGACCCCTGCATCATTCTGGCGACAGTGAGCGAGGTCGAAAGAGCGAAGAATGATGTGAAGGATTATACAGATAAGATTGTAGGCCAGCTTGATACGGACATTCAGCAGGTGATTGCTGATGCGATAACGGAGGCAAAGCGTAATTTCTGGGAGGACGATAACCCTGTCGGCACCACGCGATTTTTTAATCAGAACGTCAACCCGAATGAAAAATGGCCATGGTCAGAATGGGTGTACACCGGCGAGAATAAAACAATTCGTGTAGGCAAAGCGGATGGCTCGAACGTCGGTACGACCGGCGGCAGCGATAATGTCACTATCCAGCAGGCTAACCTGCCAGCTGTGCAGGTTAATGTCAGTGGCGAAACCAGCGAACTCCCCAGGCAGGAACTGACCACCAGGGGGGCCGGACGGCATAAACACAAAGGCGGAATGCTCGCCCCGGGTGATGTCTGGGATGATAATTACATAGTCGGTTCGGATAACGACAGCCGCCGCACACGAAATTATACGGATGAGGTGGCCGATCATAGCCATATTGTGGACTTGCCAGCCCACAAACACACGACCACTGGCAAAACCGATAACCTCGGTGAAGGGAAATCAATCAACGTGGTTGAGTCCCACACGCTGCTGATGTGCTGGAGCCGCGTTGCCTGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)