Protein

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Genbank accession
XAG97831.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MIKFHKVSGKPAKVESGDENIWFSYPNGIYVADNQGNPRLISPGKMVGDAVPVGVPNEPGLFYYNRSNKKNYISTAEKWVEIGTGSIPGTGGGSNIAGNVLINDTADNYTSVDVEGALAEIAEKFPWYFGRMQLKDFNGDVNTLLKSTENYITTSAANRPNGKTGWLIQRKASNNNTYGFVIGDDGTAQTRVNNKFTPLAAQSDLAKLQDTVDSSLGELKVNVGKGLASDGKTLANGQTISLAQDILDKIDAAGAGANFVKKAGDTMTGSLVMKAGSGQVSQVQFSSTGSANNVAILDDPRGTSKNSPYGGKEGGSRFRIANVKKNFDIMSAYSDGSVDIHANGPRAVFGNASTNGRTTILNNNNNGGTSVDIVAPFSDVPLFVKGKNGQLHYKVNGGMNSLLSGNSSSGRKNLRIAGMGSNSELATLYFEAWNTRAKGKIHSGSAINVGFNHETSKGTGDGDVCLRIFPRKAGLNGEANALRNYAVLYYEQYSQTLVVDSFKGNANFTSNERNNFVRLSSDGFITRSSVKYKNPIKKFEEDALSKVKEVTPELYAYKNDPKQSTQLGFIIEHGLPQEVVEMEGRGVNAYALTAYLWRATQQLSQEVDSLKEELENLRNS
Physico‐chemical
properties
protein length:620 AA
molecular weight: 66698,47120 Da
isoelectric point:8,87241
aromaticity:0,08387
hydropathy:-0,47903

Domains

Domains [InterPro]
DC_1220
STR
4–620
DC_1220
Coil
Unmapped
600–620
Coil
XAG97831.1
1 620
Architecture
STR
STR 4-620
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAG97831.1
1 620
Domain Start End Length (AA) Confidence
N-terminal 1 270 270 0,9234
Central domain 271 469 200 0,0582
C-terminal 470 620 150 0,9961
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-270
Central
271-469
C-terminal
470-620

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterococcus phage VRE9_4
[NCBI] 		3141818 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Enterococcus faecium
[NCBI] 		1352 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAG97831.1 [NCBI]
Genbank nucleotide accession
PP680570.1 [NCBI]
CDS location
range 128545 -> 130407
strand +
CDS
ATGATTAAGTTTCACAAGGTTAGCGGCAAGCCCGCTAAAGTAGAATCTGGCGATGAAAATATTTGGTTTTCTTATCCAAATGGTATTTATGTTGCTGACAATCAAGGCAATCCACGATTAATTTCCCCAGGGAAAATGGTTGGTGATGCTGTTCCTGTGGGAGTACCAAATGAGCCAGGTCTATTTTATTATAATAGATCAAACAAAAAAAATTATATTTCCACTGCAGAAAAATGGGTTGAAATTGGCACCGGCAGTATTCCAGGAACAGGTGGAGGCAGCAACATCGCTGGTAATGTTTTAATCAACGATACCGCTGATAATTATACCTCGGTAGATGTTGAGGGTGCTCTTGCCGAAATCGCCGAAAAATTCCCATGGTACTTCGGTAGAATGCAATTAAAAGATTTTAATGGTGACGTTAACACTCTATTAAAATCCACTGAAAATTATATTACAACTAGCGCCGCAAATCGCCCCAATGGCAAAACAGGTTGGCTCATCCAACGTAAGGCTTCTAATAACAATACTTATGGATTCGTCATTGGCGACGATGGCACCGCCCAAACAAGGGTCAATAATAAGTTCACTCCACTAGCGGCCCAATCGGACCTTGCCAAACTACAAGATACCGTTGATTCCTCTCTTGGAGAATTAAAAGTAAATGTAGGAAAAGGGTTAGCTTCTGATGGAAAGACATTAGCAAATGGACAAACTATTTCATTAGCGCAAGATATTTTAGATAAAATTGATGCTGCCGGAGCTGGAGCTAATTTTGTTAAAAAAGCTGGAGATACTATGACTGGTTCTTTAGTAATGAAAGCTGGTTCTGGACAAGTTTCTCAAGTACAGTTTAGCAGTACAGGTTCTGCTAATAATGTGGCAATATTGGACGACCCAAGAGGAACGTCCAAGAATTCTCCTTATGGAGGAAAAGAAGGCGGTTCTCGTTTTAGAATCGCTAATGTGAAAAAGAATTTTGATATTATGTCGGCTTATAGTGATGGGTCGGTTGATATTCATGCAAATGGTCCTCGTGCGGTATTTGGTAATGCAAGCACTAATGGACGAACTACTATTTTGAATAATAATAATAATGGTGGGACTTCAGTTGATATTGTTGCGCCTTTCAGTGACGTTCCATTATTTGTTAAGGGTAAAAATGGGCAGCTGCATTATAAGGTTAATGGTGGAATGAATAGTTTGCTTTCTGGTAACAGTAGCAGTGGTCGTAAAAATTTACGTATTGCTGGTATGGGAAGTAATTCTGAATTAGCTACATTGTATTTTGAAGCATGGAATACAAGAGCTAAAGGTAAAATTCATTCTGGTTCGGCTATTAATGTTGGTTTTAACCATGAGACCTCTAAGGGTACTGGCGATGGGGATGTATGTTTACGTATTTTTCCAAGAAAAGCTGGGCTTAATGGTGAGGCAAATGCTTTGAGAAACTATGCTGTATTATATTATGAGCAATATAGTCAGACTTTAGTTGTTGACTCATTCAAGGGTAATGCAAACTTTACAAGCAACGAACGTAATAATTTTGTACGTTTATCTTCTGATGGTTTTATTACACGTTCTTCTGTAAAATATAAGAATCCTATTAAGAAATTTGAAGAAGACGCTTTATCAAAAGTTAAAGAAGTTACGCCTGAGTTATATGCTTATAAAAATGATCCAAAACAAAGTACTCAATTAGGATTTATTATCGAGCATGGTCTTCCCCAAGAGGTAGTAGAAATGGAAGGGCGAGGCGTGAACGCTTATGCGCTGACAGCTTATTTATGGAGAGCGACACAACAACTGTCTCAAGAAGTAGATTCATTAAAAGAAGAATTGGAAAACTTAAGAAATAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4b21ef047f54649cbb19f2d9d3c17e9d66f4c767c41fc13400e22785e4a727bb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5927
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage library of National Institute of Infectious Disease Japan Azam,A.H., Ojima,S. and Kiga,K. 2022-12-05 — GenBank