Phage RBP Database

Genbank accession

QXL90289.1 [GenBank]

Protein name

tail fibers protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

Seq2Symm

C3 confidence 0,999

C3	0,999
C1	0,324
D2	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MADLLPTVKISDLPNATESFEGDYLVVDQSDATRKSTWSDMFSRFGMMRLFSFQEGGTLVSPKDQVIDRSTNRIYQWTGAYPKLVPADSTPETTGGVGEGAWSANDPSLRGDLAGANGSTFIGGPAGTVAQSLDGFVTPAQFMGKYPTTTEAVTALAAYAKENKKAVLAWGWNLVLETSVYIDGVEWYGGSFNQTGGNRYMYLSNSTFRWVTFTGVCTRHYGGRLIITDSSWVNNTNTAAMLLQALPIEGTIDILDSDFRGCKYGILQQGTGALVTRARFARLNFNDLTGDAIECNVVQRHYKAGGLTIEDINIDNINNTDNSPNWGIGIGVAGQGPYGANASDDQYVSGIIIRNVKMRRVRQCIHFELCRDFKVENVEVYPDASVSNGTLLASGGVVCYGCKDYIIDGVRGEMVNGATRFIYFGWGVNQGTFAAPCRDFTLRNVRTHTGLVDIPVSAMDDWTNDVKVEDIECHTFKYRGLVSKLRLADIRCKQFDGIGDYEAGQGEAGGAMKRWAWCSAEIININSLDDNGVANGKFGQVGFDHLTTYGCNFDVVQHSKTNGNRGVILLNAGNIYISDNDDFPQGKEFVKGDIILKKTGGMFVVETGGSYIEPNDFIKATVVGSKTIECAADSSIRQPWATRAFKSAGLQLTIPGAGPGGADLQTTVIRAPYQKGAWITPFYLDIADPIQTATPDNTALVSTNPVVYSERT

Physico‐chemical properties

protein length:	712 AA
molecular weight:	77323,86160 Da
isoelectric point:	5,10649
aromaticity:	0,10112
hydropathy:	-0,20183

Domain architecture

QXL90289.1

1 712 aa

ATT 48–115 · STR 346–475 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.80
ATT

G3DSA:2.10.10.80 IPR011050

IPR040775
RBD

IPR040775

QXL90289.1

1712 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1918
ATT

DC_1918 DC_0045

QXL90289.1

1712 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	48	115	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	52	103	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
IPR011050	STR	IPR011050	346	475	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

QXL90289.1

1 712 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	147	147	0,9941
Central domain	148	579	433	0,9914
C-terminal	580	712	132	0,9733

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage NINP13076 [NCBI] · taxon 2849628

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella enterica [NCBI] · taxon 28901

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

QXL90289.1 [NCBI]

Genbank nucleotide accession

MZ326168.1 [NCBI]

CDS location

range 6894 -> 9032
strand -

CDS

ATGGCAGATCTATTACCTACCGTCAAGATTTCAGATTTACCGAATGCGACGGAATCTTTCGAGGGAGACTACCTGGTTGTTGACCAGTCGGATGCAACCCGTAAATCAACATGGTCAGATATGTTCTCCCGTTTCGGGATGATGCGCCTGTTTTCCTTCCAAGAAGGGGGGACGCTTGTCTCCCCCAAAGATCAGGTGATCGACAGATCAACCAACAGGATCTATCAATGGACAGGAGCATACCCGAAACTTGTTCCTGCCGACTCCACACCGGAGACTACCGGAGGTGTTGGTGAGGGTGCGTGGTCAGCTAACGACCCATCTTTACGTGGAGACCTTGCAGGTGCTAATGGATCAACCTTTATCGGTGGACCAGCGGGAACAGTGGCTCAATCACTCGATGGTTTTGTTACCCCTGCACAATTCATGGGGAAATACCCAACAACGACAGAGGCTGTAACAGCGTTAGCTGCATACGCAAAAGAGAACAAAAAAGCTGTTCTTGCATGGGGATGGAACCTTGTTCTTGAGACAAGTGTGTATATCGACGGTGTTGAATGGTATGGTGGGAGCTTTAACCAGACTGGCGGCAACAGATACATGTATTTGTCAAACAGCACATTCCGCTGGGTGACCTTCACAGGTGTTTGTACTCGTCATTATGGTGGACGTCTTATCATTACAGACTCCTCATGGGTTAACAATACCAACACCGCAGCGATGTTACTACAAGCCCTCCCTATAGAAGGTACAATTGACATTCTGGATAGTGATTTCAGAGGTTGTAAATATGGTATCCTTCAGCAAGGTACAGGCGCTCTTGTTACTCGCGCACGTTTTGCCCGTCTCAACTTTAATGATTTGACAGGCGATGCTATTGAGTGTAACGTTGTGCAGAGGCACTATAAAGCGGGTGGATTGACAATCGAAGATATTAACATCGACAACATCAACAATACAGATAACTCTCCTAACTGGGGTATTGGTATCGGTGTTGCGGGGCAGGGTCCATATGGTGCTAACGCCTCTGATGACCAATATGTTAGTGGGATCATCATTCGTAACGTTAAGATGCGTCGAGTTCGTCAATGTATCCACTTCGAGCTTTGCCGTGACTTTAAGGTAGAGAACGTTGAGGTTTATCCTGATGCATCTGTTTCTAACGGAACACTGCTGGCATCCGGTGGTGTCGTATGTTATGGCTGCAAAGACTATATCATTGATGGTGTTCGTGGCGAAATGGTCAACGGTGCTACCCGATTCATTTATTTTGGGTGGGGTGTTAACCAAGGCACCTTTGCTGCTCCGTGCCGTGACTTTACACTGCGAAATGTACGTACTCATACGGGACTGGTAGATATTCCAGTTAGTGCTATGGACGACTGGACCAACGATGTGAAGGTTGAGGACATTGAGTGCCACACTTTCAAATATCGCGGTCTTGTCTCAAAACTTCGTCTTGCCGACATCCGCTGTAAACAGTTTGATGGTATTGGCGACTATGAGGCTGGACAAGGTGAAGCAGGCGGGGCGATGAAGCGTTGGGCTTGGTGTTCTGCTGAGATCATTAATATCAATAGCCTTGATGATAATGGTGTCGCTAACGGTAAGTTCGGTCAGGTAGGCTTTGACCACTTAACAACATACGGTTGTAACTTCGATGTGGTTCAGCACTCAAAGACAAACGGAAACAGAGGTGTCATACTGCTTAATGCTGGTAACATCTATATCTCTGATAATGATGATTTTCCTCAAGGAAAGGAATTCGTTAAAGGGGACATCATTCTGAAGAAGACTGGTGGTATGTTTGTTGTTGAGACAGGGGGTTCTTACATTGAACCTAACGATTTCATCAAGGCAACTGTGGTTGGCTCAAAAACGATTGAGTGTGCAGCAGACTCAAGTATCCGACAACCTTGGGCTACTCGTGCATTTAAATCTGCTGGGTTGCAACTCACCATCCCAGGCGCAGGCCCCGGTGGTGCGGATCTCCAGACAACGGTTATAAGAGCGCCATATCAAAAAGGTGCTTGGATCACTCCGTTCTATCTGGACATTGCAGATCCAATCCAGACAGCCACACCTGATAACACGGCTCTTGTTTCGACAAATCCCGTAGTATACAGCGAAAGGACTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)