Phage RBP Database

Genbank accession

CP062451.1|protein_5|CP062451.1_CDS_[2896..4134] [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,88

Seq2Symm

C1 confidence 0,324

C1	0,324
C3	0,149
C2	0,050

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MYKIKDVETRIKNDGVDLGDIGCRFYTEDENTASIRIGINDKQGRIDLKAHGLTPRLHLFMEDGSIFKNEPLIIDDVVKGFLTYKIPKKVIKHAGYVRCKLFLEKEEEKIHVANFSFNIVDSGIESAVAKEIDVKLVDDAITRILKDNATDLLSKDFKEKIDKDVISYIEKNESRFKGAKGDKGEPGQPGAKGDTGKKGEQGTPGKNGTVVSINPDTKMWQIDGKDTDIKAEPELLDKINIANVEGLENKLQEVEKIKDTTLNDSKTYTDSKIAELVDSAPESMNTLRELAEAIQNNSISESVLQQIGSKVSTEDFERFKQSLNSLYADKNHSHTIKQIEGLENALSKKSDINHSHDERYLLSSNAFTKEEADKLYQPIGSSQPSLNIWTGSETEYNYLYQKDPNTLYLIKG

Physico‐chemical properties

protein length:	412 AA
molecular weight:	46212,37110 Da
isoelectric point:	5,29912
aromaticity:	0,06553
hydropathy:	-0,68592

Domain architecture

CP062451.1|protein_5|CP062451.1_CDS_[2896..4134]

1 412 aa

ATT 4–141 · STR 178–230 · STR 327–356 · RBD 386–410 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR018913
ATT

IPR018913 G3DSA:1.20.5.320 Coil PF12789 IPR056923

G3DSA:2.60.40.3350
ATT

G3DSA:2.60.40.3350

CP062451.1|protein_5|CP062451.1_CDS_[2896..4134]

1412 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0885
STR

DC_0885

CP062451.1|protein_5|CP062451.1_CDS_[2896..4134]

1412 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR018913	ATT	DC_0557	4	141	InterPro cluster	BppU, N-terminal	Central	Medium	Text match	333 proteins / 333 hits
G3DSA:2.60.40.3350	ATT	G3DSA:2.60.40.3350	14	125	Merged direct domain	G3DSA:2.60.40.3350	N-terminal	Low	Positional only	41 proteins / 41 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	178	230	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
Coil	Unmapped	-	244	264	Coils	Coil	-	-	-	-
PF12789	STR	DC_0212	327	356	InterPro cluster	PF12789	C-terminal	Low	Positional only	31 proteins / 33 hits
IPR056923	RBD	DC_0181	386	410	InterPro cluster	Minor tail protein gp31, C-terminal	C-terminal	High	Text match	208 proteins / 208 hits

Proteins with similar domain architecture

Phage

Staphylococcus phage ECel-2020b [NCBI] · taxon 2777211

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host No host information

No CDS data available.

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)