Phage RBP Database

Genbank accession

GENB_c7adea99b973 [GenBank]

Protein name

receptor binding protein

RBP type

TF

Evidence RBPdetect

Probability 0,91

TF

Evidence RBPdetect2

Probability 0,98

Protein sequence

MNNTNKHISDEAIYVRFDPIGSNFNSGVKDVQTALALLSPDAVSGTPSATETVQGKIRIGTQEEVNNGVLGDVAVTPKTLELRLQRPQATTDLFGVTRYATNDEALVGTATDRSIVASSLKYVIDWAFTNRTASESNNGVLKLSSTPAAQAGVDDTTAMTPLKTKQAIAAATALIPAYGPATESAMGVVRLATLAQLRDPNIREGFSASPFTLNQWQATESNIGAIKLASQANMDNGSGDTAVTPSKFISQRATTGRVGTTLLANNIGDGSRALSGTAAVLPSDRAAVSTGGVYEGNTSPNQKYMTKGELDTTIPVGGMFMAAFNSDHGNLLIANGRWLPVSGYQTLFQRIGFTYGGNGSDHFALPDMRGVTARGFDAGRGIDAGRGFGTYQEDAQQRIWGNWTIDDQAAWSNYPPDGAYYADGQGTINYDAVSKNNKWFALRMHFDSSRVVRTANENRMKNVAINYVIRVI

Physico‐chemical properties

protein length:	472 AA
molecular weight:	50334,42930 Da
isoelectric point:	6,14739
aromaticity:	0,07839
hydropathy:	-0,29386

Domain architecture

GENB_c7adea99b973

1 472 aa

ATT 303–371 · STR 372–471 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR037053
ATT

IPR037053

SSF88874
STR

SSF88874

IPR011083
ATT

IPR011083

GENB_c7adea99b973

1472 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0176
STR

DC_0176

GENB_c7adea99b973

1472 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR037053	ATT	IPR037053	303	369	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
SSF88874	STR	SSF88874	310	471	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR011083	ATT	DC_0235	318	371	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits

Proteins with similar domain architecture

Phage

Salmonella phage KM16 [NCBI] · taxon 2797303

Viruses Duplodnaviria Heunggongvirae Uroviricota Caudoviricetes

Host

Salmonella paratyphi [NCBI] · taxon 54388

cellular organisms Bacteria Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales

Genbank protein accession

MW325771.1_CDS_[101396..102814] [NCBI]

Genbank nucleotide accession

MW325771.1 [NCBI]

CDS location

range 101396 -> 102814
strand +

CDS

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)