Protein

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Genbank accession
AYD79886.1 [GenBank]
Protein name
putative membrane protein
RBP type
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MEIIRLPIYTSNVPIPAEGKRPSDEPPVKYGLENIVHTVAAANIPDPQNIVVSEGTTLTAIGATAQFNLTTFNNCYPISWLNTGTNKLKFRVKALLTASFIGTVDSFLSLYNCIVINTNIGSTPYGGFLVLTIGKEGSGADLILSDANFLNGKFYASANRVSGEF
Physico‐chemical
properties
protein length:165 AA
molecular weight: 17691,96900 Da
isoelectric point:5,75770
aromaticity:0,09697
hydropathy:0,15636

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYD79886.1
1 165
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9677
Central domain 17 154 139 0,0083
C-terminal 155 165 10 0,9951
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-154
C-terminal
155-165

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA11
[NCBI] 		2382310 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYD79886.1 [NCBI]
Genbank nucleotide accession
MH389777 [NCBI]
CDS location
range 50254 -> 50751
strand -
CDS
GTGGAAATAATTCGTCTTCCCATTTACACGTCTAACGTGCCTATTCCGGCAGAAGGTAAGCGTCCGTCTGACGAACCGCCTGTTAAGTACGGTCTTGAAAACATCGTTCACACGGTTGCCGCTGCGAATATTCCCGATCCTCAAAACATCGTTGTAAGTGAAGGAACAACGCTTACTGCAATCGGGGCTACTGCGCAATTCAATCTGACAACTTTCAACAACTGCTATCCTATTTCGTGGTTGAATACGGGAACGAACAAATTAAAGTTTCGCGTGAAGGCTCTTTTAACTGCGAGTTTTATTGGAACCGTTGATTCGTTTCTCAGTCTGTATAACTGCATCGTGATTAACACTAACATCGGATCAACTCCTTACGGTGGTTTCTTAGTGCTCACGATTGGCAAAGAAGGAAGCGGTGCGGATTTAATTTTGTCGGACGCGAATTTTCTTAACGGGAAATTCTATGCGAGTGCCAATCGCGTATCAGGGGAATTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ac7139a735f8dda6ec23fc1681c1c05ff4846136d7ea89c71a41d0d233ff4b65
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2914
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo bacteriophages are represented within an increasing diversity of environmental viruses infecting the emerging phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank