Protein

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Genbank accession
YP_002922733.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MALKLSNNAVGILAGTLDPDSTTLALQPGQGAAFPVLSAGDWCPGTLVHSTGTVEVVRVTARSNDSFTIERAQEGTAPQQFNPGDRFEHRLTAGALMSIVGDVNGLSAAFARIQPRVGDLKIWTGAIADIPAVHGPGWHLADGQNGTIDLRDKFIVAAGGSYAPGNTGGAATVALTAAQMPQHNHGVNDPGHAHGVSDPTHAHSVYDPGHSHGHNTAALTPSSTGGGAFQINGYAGGTINAAATGISIYGAGTGISIQGSGTGISTQNAGSGAVHENRPPYYALAIIQYTGA
Physico‐chemical
properties
protein length:292 AA
molecular weight: 29450,14950 Da
isoelectric point:6,00472
aromaticity:0,05822
hydropathy:-0,09212

Domains

Domains [InterPro]
DC_0891
STR
1–292
DC_0891
cd22641
STR
122–190
cd22641
SSF88874
STR
136–285
SSF88874
YP_002922733.1
1 292
Architecture
STR
STR 1-292
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_002922733.1
1 292
Domain Start End Length (AA) Confidence
N-terminal 1 194 194 0,7824
Central domain 195 281 88 0,0064
C-terminal 282 292 10 0,9972
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-194
Central
195-281
C-terminal
282-292

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage BcepIL02
[NCBI] 		2886898 Uroviricota > Caudoviricetes > Lessievirus >
Host Burkholderia cenocepacia
[NCBI] 		95486 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_002922733.1 [NCBI]
Genbank nucleotide accession
NC_012743.2 [NCBI]
CDS location
range 38048 -> 38926
strand +
CDS
ATGGCTCTCAAGCTCTCCAACAATGCGGTCGGCATTCTCGCCGGCACGCTTGACCCCGACAGTACGACGCTCGCGCTGCAACCCGGACAGGGTGCCGCGTTCCCCGTTCTTTCCGCTGGCGATTGGTGCCCTGGAACGCTGGTGCACTCGACCGGCACTGTCGAGGTCGTGCGCGTAACCGCGCGCAGCAACGACAGCTTTACCATCGAGCGTGCTCAGGAAGGCACCGCGCCGCAGCAGTTCAACCCCGGTGACCGCTTCGAGCATCGGCTCACGGCCGGCGCGCTGATGTCGATCGTCGGCGACGTCAATGGTCTGTCGGCTGCATTCGCGCGGATTCAGCCGCGCGTCGGCGACCTGAAAATCTGGACGGGCGCTATCGCCGACATCCCGGCCGTACATGGTCCGGGCTGGCATCTGGCGGACGGGCAGAACGGCACCATCGACCTGCGCGACAAGTTCATCGTCGCGGCGGGCGGCTCTTACGCACCCGGCAACACCGGCGGCGCCGCAACCGTGGCGCTGACCGCGGCGCAGATGCCGCAGCACAATCACGGCGTGAATGACCCCGGCCACGCGCACGGCGTGAGCGATCCGACGCACGCCCACAGTGTCTACGATCCGGGGCACTCGCACGGCCACAACACGGCGGCGCTGACGCCCTCGAGCACGGGCGGCGGTGCATTCCAGATCAACGGCTATGCGGGCGGCACGATCAACGCGGCGGCTACTGGCATCAGCATCTACGGCGCCGGCACGGGCATCAGCATTCAGGGCTCGGGAACGGGCATCAGCACGCAGAACGCCGGCAGCGGCGCTGTACACGAGAACCGGCCGCCCTACTACGCGCTCGCGATCATCCAGTACACGGGAGCCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
547db76df9fcf304b62a2f1a808172e77447e457c2049572e2ced9c87f0fca10
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8327
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome and characterization of Burkholderia cenocepacia phage BcepIL02 Gill,J.J., Summer,E.J., Russel,W., Cologna,S., LiPuma,J.J., Gonzalez,C.F. and Young,R.F. 2022-04-21 — GenBank