Protein

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Genbank accession
BDD79284.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSGGGGLNSIQPLWGYNYSSNSSTGKITPTNHTAAAGAIVTPPISLSGYTTAMKGVDTINYANGSRTSTADFTAILRVLLVGATGYVTIMSSAFNIRTGDNGFGNRLQFGYAMSTIATCWDASVTEGQMSTAWYHIAFMRKANVNTVYINGTAIMLANGTGSSYTYANFSDSTSIINNNSMIVGQSGINVYTAEWGFWDSAIITANFTPPVGGLI
Physico‐chemical
properties
protein length:215 AA
molecular weight: 22606,03450 Da
isoelectric point:6,69958
aromaticity:0,11163
hydropathy:0,10000

Domains

Domains [InterPro]
IPR013320
STR
38–188
IPR013320
BDD79284.1
1 215
Architecture
STR
STR 38-188 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDD79284.1
1 215
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0043
Central domain 11 204 195 0,2361
C-terminal 205 215 10 0,9784
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-204
C-terminal
205-215

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage FLC8
[NCBI] 		2906466 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Burkholderia glumae
[NCBI] 		337 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDD79284.1 [NCBI]
Genbank nucleotide accession
LC667450 [NCBI]
CDS location
range 626 -> 1273
strand -
CDS
GTGTCGGGTGGCGGTGGTCTCAACTCCATTCAGCCTCTGTGGGGTTATAATTACAGCAGCAATTCGTCGACTGGAAAGATCACTCCCACGAACCACACTGCTGCCGCAGGTGCGATTGTAACGCCTCCTATTTCGCTCTCTGGTTATACGACTGCGATGAAGGGCGTTGATACGATCAATTATGCTAATGGAAGTCGGACCAGTACTGCTGACTTCACTGCAATTCTTCGAGTATTACTGGTCGGCGCAACCGGCTATGTAACGATAATGAGCAGTGCGTTTAATATCCGAACCGGCGACAACGGTTTCGGTAATCGACTGCAGTTCGGCTATGCCATGTCGACCATCGCCACATGCTGGGATGCCAGTGTGACTGAAGGCCAGATGTCGACAGCGTGGTACCATATCGCATTTATGCGAAAGGCCAATGTAAATACCGTTTACATAAACGGTACTGCAATCATGCTAGCAAATGGCACTGGTTCTTCCTATACCTATGCCAACTTCTCAGACAGTACGTCTATCATAAACAACAACAGCATGATTGTTGGTCAGTCTGGTATAAACGTTTATACGGCCGAATGGGGATTCTGGGATTCTGCAATCATTACGGCTAACTTTACACCGCCTGTTGGTGGACTGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b0fdb70ce7f44c1c0cdf20e1449bc60ca0142c4473711443294a23c5a02fc4dc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7010
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Optimal preservation method of new biocontrol agent Burkholderia jumbophages having a potential suppressing rice seedling rot disease Kanaizuka,A., Sasaki,R., Miyashita,S., Ando,S. and Takahashi,H. 2022-11-19 — GenBank