Protein

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Genbank accession
AUR88088.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSCSDFPTIQTAKTFKLDAETQNEVVTSDNDRTNPASDGKTKLTLKGFENQVETLIEEGSQEITDAIENTIGKSYIGTWTQGVTTFTTMNEYSDFNGITYKPKSGATLPYTAQTGDPTTAPDNANVVPFSDVNSSNIGTLTSYRSANVIDMISGVPIGAAVNVDHYIDQVWFTGGTQWRVISTPVSDITDFEPLNEIYLSDLGVINDGVTDNSISLNMLRTLLISDSEKDWRVVGSGGVVCYSDNKWLVDVKKISFDGMGCELKNISTSPSSNEARPLFIQRVFEGDIFNNTFDVHDGILIQDAIAGDGKVITSTPSDAARISEGEWALVYGYDQQQFSGYLPNARFFDWVLVENVEQSTGEISFSGGNRLRNSYFNSWADGESGGVAIGKPRIISTVRTISQGYSANRVFPLNHNFKNVKFNSESPVGVSWGHSSVFLDMSSITIRNAGTFYTALGSKLCKYDNITFDQGPQKPLTEFAIEQDKLTELCVVKNTLPGHGLAGGTGVDNIVFENMSFPKDCRVRVGAKQVTFNQCELLGCRSVSQPEYLLQYSDAAVESIRFNNCRMILNDDQLGISAPQSGSTIITSSEWSSLGDREISITGDAITGEYSSKLSVGTMLVIGEALTDGSGETGVIQSIRTSGSDTIVALRGTVSGSFDDTQDIRIYNSNAPTFNDGCSIKKRDGSIVNQPLTATTPAFLYGACGVKTISYSTLQMSDFVYGEIGFPCIIKEIRVEIVKPYTGASSEFFIEIARIEQASQRVQIDLKASGYRRLNSFEKTNQQTGDSVIQNLFDSPNLRGIKVFNRNDSGGGNPSDTFDSGVMPIYNVEIDLTPIIV
Physico‐chemical
properties
protein length:837 AA
molecular weight: 91123,41160 Da
isoelectric point:4,60080
aromaticity:0,08961
hydropathy:-0,23417

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR88088.1
1 837
Domain Start End Length (AA) Confidence
N-terminal 1 243 243 0,9310
Central domain 244 609 367 0,9480
C-terminal 610 837 227 0,9041
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-243
Central
244-609
C-terminal
610-837

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.108.O._10N.222.51.A4
[NCBI] 		1881194 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR88088.1 [NCBI]
Genbank nucleotide accession
MG592482.1 [NCBI]
CDS location
range 16754 -> 19267
strand +
CDS
ATGAGTTGTTCAGACTTCCCAACCATACAAACGGCAAAGACTTTCAAACTCGATGCTGAAACACAAAATGAGGTCGTTACATCTGATAATGATCGCACTAATCCAGCCAGTGACGGAAAGACAAAGCTGACGCTAAAAGGCTTTGAGAATCAAGTTGAGACGCTAATTGAAGAAGGCTCGCAAGAGATTACAGACGCAATCGAAAACACCATCGGAAAGTCTTACATCGGAACATGGACACAGGGAGTCACTACATTCACTACAATGAATGAGTACAGTGATTTTAATGGCATTACCTACAAGCCGAAGTCAGGCGCTACACTTCCATATACAGCGCAGACAGGAGACCCAACGACAGCACCAGATAATGCTAATGTTGTGCCTTTTAGTGATGTTAACTCATCAAATATAGGTACCCTAACTAGCTATCGTTCGGCAAACGTGATTGATATGATATCAGGGGTTCCAATCGGGGCGGCAGTTAATGTTGACCATTATATAGATCAAGTTTGGTTTACTGGCGGAACGCAGTGGAGAGTAATAAGTACACCAGTCAGCGATATAACAGATTTTGAACCGTTAAATGAAATATACCTAAGTGATTTAGGGGTGATTAATGATGGTGTAACGGATAATTCGATCTCACTAAACATGCTTAGAACTCTATTAATCTCTGATAGCGAAAAAGACTGGAGGGTTGTCGGATCTGGTGGTGTGGTATGCTATTCAGATAACAAATGGCTGGTTGATGTGAAGAAAATATCATTTGACGGTATGGGGTGCGAACTGAAAAACATAAGTACATCACCATCCTCAAATGAAGCAAGACCACTGTTCATCCAAAGGGTATTTGAGGGTGATATATTTAATAACACATTTGACGTCCATGATGGAATCTTAATACAGGATGCAATCGCAGGTGATGGCAAAGTTATAACTAGCACTCCTTCCGATGCCGCTAGAATATCAGAGGGTGAGTGGGCTTTGGTTTACGGTTACGATCAGCAACAGTTTTCAGGATACCTGCCTAATGCTAGATTTTTCGACTGGGTTTTGGTCGAGAATGTAGAGCAATCTACTGGAGAAATTAGCTTTAGTGGCGGTAACAGGCTAAGAAATAGTTATTTTAACTCATGGGCTGACGGAGAGTCTGGTGGAGTAGCAATAGGAAAGCCAAGAATTATATCCACAGTTAGGACAATATCACAAGGCTACAGCGCAAATAGAGTGTTTCCATTAAATCACAACTTTAAAAATGTGAAATTTAACTCAGAATCCCCTGTTGGGGTTAGCTGGGGTCATTCTTCTGTTTTTCTTGATATGTCAAGCATTACGATCAGAAATGCAGGGACATTCTATACCGCTCTTGGATCAAAGCTTTGTAAATACGACAACATAACATTTGATCAGGGGCCACAGAAGCCGTTAACCGAGTTCGCAATAGAGCAAGACAAGCTCACAGAGTTATGTGTAGTAAAGAATACATTACCAGGCCACGGATTGGCTGGAGGTACTGGGGTTGATAATATTGTTTTTGAAAATATGTCATTCCCAAAAGACTGTAGAGTCAGAGTCGGAGCAAAACAAGTTACATTCAATCAATGTGAATTACTTGGCTGTCGATCCGTATCTCAACCTGAGTATCTACTGCAATACTCTGACGCCGCTGTTGAATCAATAAGATTTAACAATTGCCGCATGATTTTAAATGACGACCAACTAGGGATTTCTGCACCACAATCCGGATCAACCATAATAACCAGCTCAGAGTGGTCATCCTTGGGTGACAGAGAAATATCAATAACAGGTGACGCAATTACTGGTGAGTACTCATCTAAGTTATCGGTTGGGACTATGTTAGTTATCGGGGAAGCGCTAACAGACGGAAGTGGAGAGACTGGGGTTATTCAAAGTATACGCACATCAGGCTCTGACACTATAGTTGCACTAAGAGGAACCGTGAGCGGTTCTTTTGATGACACGCAGGACATTAGGATTTACAATTCAAATGCGCCAACATTTAATGATGGTTGCTCAATCAAAAAACGAGATGGAAGCATTGTGAACCAACCTCTTACAGCAACAACACCAGCGTTCTTATATGGAGCATGTGGAGTGAAAACAATTAGTTACTCAACACTTCAGATGAGTGACTTTGTATATGGAGAAATAGGATTCCCGTGCATCATAAAGGAAATTAGAGTTGAAATTGTAAAACCTTACACTGGTGCGTCATCTGAATTTTTTATCGAAATAGCAAGGATTGAGCAGGCTAGCCAGCGAGTACAGATTGATTTAAAAGCTAGCGGGTACAGGAGGCTTAACAGCTTCGAAAAAACAAACCAACAAACAGGTGATTCAGTAATTCAAAACCTATTTGACAGCCCGAATCTTAGAGGAATAAAGGTATTTAACCGCAATGATTCTGGTGGAGGAAACCCATCTGATACATTTGATAGTGGAGTAATGCCGATCTACAATGTAGAGATAGACCTAACTCCGATAATAGTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
405422492c571f136be8711e41d4a3b2171b6a1f0d22321337cc72e4bac46792
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6666
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank