Protein

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Genbank accession
YP_009605803.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MSSTLFPDVRRLEFDRSGVSADNHITDDYIDLPVAGSNRAIVLKHGAFYTDSLILKDDGGNILEKWVDYQPVYPYNRPELNITEMTGKDNAAFIMIINPSLTGRVIADYQAVGIPSGIANRDLIDILDAIAKDARKYYWDDIFDKPDKFPPSPHPLDIKDTYNWAPMTEAMARFVDCLKHLDRLPTIQDYIDQIDTVYKDTLPKLNAVYSAFLTHRRNYSNPHLDVKTTVVNLNNVDDFDMATLAEVIAGTSSVKFMSPYTGSQAAYNTLLKNDTSLVHVNRVPMVQFGDLSTTAIPYTIAGFVLTITADVPAMLASREFTLKKGAIDLTKFVSAPANKTLFLYVRIRNGQASYEVASAASPETTTYINVGRIVTGASAITSVTINKISGLGTVRVSEVQIGSAIAVTSGLPSQSANLNW
Physico‐chemical
properties
protein length:420 AA
molecular weight: 46222,93760 Da
isoelectric point:5,40956
aromaticity:0,09048
hydropathy:-0,07571

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009605803.1
1 420
Domain Start End Length (AA) Confidence
N-terminal 1 374 374 0,7721
Central domain 375 409 36 0,0069
C-terminal 410 420 10 0,9300
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-374
Central
375-409
C-terminal
410-420

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage vB_EamM_Simmy50
[NCBI] 		1815988 Uroviricota > Caudoviricetes > Chimalliviridae > Agricanvirus simmy50 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009605803.1 [NCBI]
Genbank nucleotide accession
NC_041974 [NCBI]
CDS location
range 19221 -> 20483
strand +
CDS
ATGAGCAGTACTTTATTTCCTGATGTACGTCGGTTGGAGTTTGACCGCTCAGGCGTTAGCGCTGACAATCACATCACGGACGATTACATTGACCTGCCTGTGGCGGGATCAAACCGGGCGATCGTGTTAAAGCATGGGGCGTTCTATACCGACTCATTGATATTGAAAGATGACGGCGGCAATATCCTGGAGAAGTGGGTGGATTACCAACCTGTCTATCCTTATAACCGCCCTGAGCTCAATATCACTGAGATGACCGGCAAGGACAACGCGGCGTTTATCATGATCATCAATCCCAGTCTGACCGGACGGGTGATCGCTGATTATCAGGCAGTGGGAATTCCAAGCGGGATCGCTAACCGGGACTTGATCGACATCCTGGATGCCATTGCCAAAGATGCCCGTAAGTATTACTGGGATGATATCTTTGATAAGCCCGATAAGTTCCCGCCATCACCACACCCATTGGATATCAAAGACACCTACAACTGGGCGCCGATGACAGAAGCCATGGCACGGTTCGTGGATTGTTTGAAACACCTTGATCGTCTGCCAACCATTCAGGATTACATCGATCAGATCGACACGGTGTATAAGGATACGTTACCAAAACTCAATGCAGTTTATAGCGCGTTCCTCACCCACCGACGTAACTACAGTAACCCGCATCTTGATGTGAAGACCACAGTAGTTAATCTGAACAATGTGGATGATTTTGATATGGCGACCTTGGCAGAGGTCATTGCCGGCACCTCCAGTGTTAAGTTCATGTCACCGTACACCGGCTCGCAAGCGGCTTACAATACCCTGCTGAAGAATGACACCTCGTTAGTGCACGTTAACCGTGTACCGATGGTGCAGTTCGGGGATCTGAGTACCACCGCGATTCCGTATACGATCGCAGGCTTCGTACTGACCATCACCGCTGACGTGCCGGCGATGTTGGCATCACGGGAGTTCACCCTGAAGAAAGGGGCGATCGACCTGACCAAGTTTGTCAGTGCCCCGGCGAACAAGACCCTCTTCCTCTATGTGCGTATCCGTAATGGACAAGCGAGCTATGAGGTCGCGAGTGCAGCATCACCTGAGACCACCACGTATATCAACGTAGGGCGCATTGTAACCGGTGCATCTGCTATAACGTCTGTTACGATCAATAAGATCTCCGGACTTGGTACCGTGCGTGTCAGTGAGGTTCAGATTGGTTCTGCGATTGCAGTGACATCTGGTCTGCCATCCCAATCGGCGAATTTGAACTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d797376a4386652f2fb2d833fba1fb10c4f87b6044d9c1c7c1970b8a23ecaa26
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6980
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50