Protein

View in Explore
Genbank accession
XCO42285.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
Protein sequence
MTTKVIFTFHSPDGSPQANEKFTVRLTRPGMSDAEHCVVIPETYEMVTDAKGEFTMDLESSTSAYRVTAIGDEDEYEDDPCSQYTFTFYVPDSADPVYVQELILMPPPTNLPWDEEAMNKITQAVVDARNARDDAEESADRAEAQVGLAAEQVTLAKAEVTKATAQADRSKVEADRATTQATNAANSATAAANSATQANTQANRAKTEADRSKSEADRARDLADAVAEKVEGGSLPPLVGMNETFTYEGTDPYRWTVSGPATAVSDGSVMRLTKTDGSGSRAFLRQAVTFPDSHWIVYMRVKTQTGTAAQNRSAQIRFIAADNKDCVVYFNVNVNGIVEPNTIHMQGTEGSSRNAATMFTGLNTESWIDLAVKYDAVNRHIELFRRMPNGTWQKGGGRLMVDAIKPAFIEVSSMPVAPLNWWLDLDFISVCKPNLICYGDSIAAGQNEYGVTRGSNSYNNNRNWAGTWFGKVPLYATNRNNLVLVQGVEGRRTWQYLSQLSEISNSGVKVVFIHASMNDVNDATMTMEKRTSDTQAIIDQLHAVGAQVVLFNSMQGTKAYNDASTTTVKLRDYTDQWWNTELPKVNGLAQTLDIARLIAKDGYMDPALGASDGLHLTDASAQKIADKLGQFFSNSSDTNGFASLDSPAFTGIPTVPTQTPFLPYGKQIANTEYVITFIQDWTSNYGYGDLSMRNRTGSQMEAGGVRSGYYYVPGNSSNPLPGNVYAFVHHMSYDTNKGWELWNHCYTDRVYMRYSNNAGVWQTPVEVVTEKWMERNSFMTPRVSAFNRLPVASSAGFEGVVPLQTNSSGAWRNVNAGVAGLGLLGATTAGNALNYIGGMPKAPTNDRANSNLNNLPDECGFYGLGPAPYSNIPPGVDAINPVGSTVYHQVYDANTATQIFIPRTSDICYFRRKAGGTWSPWVRYLTDLQLVGTTTDSSAGVPNGAIMQINGSAAVNVGVALRFADGTQIVRALLQLDYGAVDILQRQFTFPMAFVGKPVVTATLEQGTVADINNMPLQALGPVMVASIYAGNCNVRVMRSQGYTAGGFAAGSKMLCSVIAMGFWK
Physico‐chemical
properties
protein length:1065 AA
molecular weight: 115842,26640 Da
isoelectric point:5,19812
aromaticity:0,09296
hydropathy:-0,28808

Domains

Domains [InterPro]
DC_0123
ATT
1–577
DC_0123 DC_0857
Coil
Unmapped
118–152
Coil IPR051532 cd19958
Coil
Unmapped
195–222
Coil IPR036514
SSF52266
STR
432–630
SSF52266
cd00229
ENZ
435–631
cd00229
IPR013830
ENZ
437–620
IPR013830
XCO42285.1
1 1065
Architecture
ATT
STR
STR
ATT 1-577 | STR 578-637 | STR 714-1065
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCO42285.1
1 1065
Domain Start End Length (AA) Confidence
N-terminal 1 235 235 0,9849
Central domain 236 481 247 0,5710
C-terminal 482 1065 583 0,7829
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-235
Central
236-481
C-terminal
482-1065

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_Pae_TUMS_PL
[NCBI] 		3163585 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO42285.1 [NCBI]
Genbank nucleotide accession
PP910670.1 [NCBI]
CDS location
range 39792 -> 42989
strand +
CDS
ATGACTACCAAGGTGATCTTCACCTTCCATAGCCCGGACGGTAGCCCACAGGCGAACGAGAAGTTCACCGTGCGACTGACCCGTCCTGGCATGAGCGATGCAGAGCACTGCGTCGTAATTCCCGAAACCTACGAGATGGTGACCGACGCCAAGGGCGAGTTCACCATGGACCTGGAATCGTCCACCTCTGCCTACCGCGTCACTGCTATAGGTGATGAAGACGAGTACGAAGACGATCCCTGCTCGCAGTACACCTTCACCTTCTACGTGCCGGACTCTGCTGATCCGGTCTACGTGCAGGAACTGATCCTGATGCCTCCGCCCACGAATCTGCCGTGGGACGAGGAAGCCATGAACAAGATCACCCAGGCGGTGGTCGATGCTCGCAATGCACGAGACGATGCCGAAGAGTCGGCTGACCGTGCAGAGGCTCAGGTTGGTTTGGCTGCTGAGCAAGTGACCCTTGCAAAGGCAGAGGTGACCAAGGCTACCGCTCAGGCTGACCGCTCCAAGGTGGAAGCTGACCGTGCCACTACCCAGGCCACGAACGCAGCCAACTCGGCTACTGCTGCGGCGAACTCTGCCACCCAGGCCAACACTCAAGCCAACCGTGCGAAGACGGAAGCCGACCGCTCCAAGAGTGAGGCTGACCGTGCACGGGATCTGGCTGATGCCGTGGCTGAGAAAGTCGAGGGTGGATCTCTGCCTCCGCTGGTGGGCATGAACGAAACCTTCACCTACGAAGGTACCGACCCGTACCGCTGGACCGTCTCCGGTCCTGCTACGGCTGTATCGGACGGTAGCGTCATGCGTCTCACCAAGACCGATGGCAGCGGCTCTCGTGCTTTCCTGCGGCAGGCAGTGACCTTCCCGGACAGTCACTGGATCGTCTACATGCGTGTGAAGACCCAGACCGGTACCGCTGCTCAGAATCGATCTGCACAGATCCGCTTCATCGCTGCTGACAACAAGGACTGCGTGGTCTACTTCAACGTCAACGTGAACGGTATTGTCGAACCCAACACCATCCACATGCAGGGCACCGAGGGTAGTTCCCGTAACGCTGCCACCATGTTCACTGGTTTGAATACCGAGTCCTGGATAGATCTCGCTGTGAAGTACGATGCAGTCAACCGCCACATCGAACTTTTCCGCCGTATGCCCAATGGCACCTGGCAGAAGGGTGGCGGTCGTCTGATGGTTGATGCTATCAAGCCGGCCTTCATCGAAGTCTCGTCCATGCCGGTAGCACCTCTGAACTGGTGGCTGGATCTGGACTTCATCTCGGTGTGCAAGCCCAACCTCATCTGCTACGGCGACAGCATCGCCGCAGGCCAGAACGAGTACGGTGTGACTCGCGGGAGTAACTCCTACAACAACAATCGCAACTGGGCTGGTACTTGGTTTGGTAAGGTTCCGCTGTATGCCACGAATCGGAACAACCTCGTGCTTGTGCAGGGTGTGGAAGGTCGCCGTACTTGGCAGTACCTCAGCCAGCTGTCGGAGATCTCCAACTCTGGCGTCAAGGTAGTCTTCATTCATGCCAGCATGAATGACGTGAACGATGCCACCATGACCATGGAGAAGCGCACCTCTGATACCCAAGCCATCATCGACCAGCTTCATGCTGTCGGTGCCCAGGTGGTGCTGTTCAACTCCATGCAGGGCACGAAGGCGTACAACGATGCTTCGACCACTACCGTCAAGCTTCGGGACTACACTGATCAGTGGTGGAACACTGAACTACCCAAGGTCAATGGTTTGGCCCAGACGCTGGACATTGCTCGACTCATCGCCAAGGACGGGTACATGGACCCTGCCCTCGGTGCGAGTGATGGCCTGCACCTTACCGATGCCTCGGCACAGAAGATCGCCGACAAGCTTGGCCAGTTCTTCTCCAACTCCAGCGATACCAATGGCTTCGCCTCGTTGGATAGCCCAGCCTTCACTGGTATCCCGACTGTCCCCACGCAGACTCCTTTCCTGCCTTACGGCAAGCAGATCGCCAACACCGAGTACGTCATTACCTTCATCCAGGACTGGACCAGTAACTATGGTTACGGTGACCTGTCGATGCGCAATCGGACCGGTTCCCAAATGGAAGCCGGTGGGGTGCGTAGCGGTTATTACTATGTTCCTGGGAATTCTTCTAACCCCTTGCCGGGGAATGTTTATGCATTCGTGCACCACATGTCCTACGACACCAACAAGGGTTGGGAACTCTGGAACCACTGCTACACCGACCGTGTGTACATGCGTTATTCGAACAACGCAGGTGTATGGCAGACGCCGGTAGAGGTGGTTACTGAGAAGTGGATGGAGCGTAATAGCTTCATGACCCCACGGGTTTCTGCATTCAACCGTCTGCCCGTGGCTTCTTCTGCTGGTTTTGAAGGGGTTGTTCCCTTGCAGACCAACAGTAGTGGGGCTTGGCGTAACGTGAATGCTGGTGTAGCTGGGTTGGGCCTTCTCGGTGCAACTACGGCTGGTAATGCACTGAACTACATTGGTGGTATGCCCAAAGCCCCAACCAATGATCGGGCCAACAGTAACCTCAACAATTTGCCTGATGAGTGTGGTTTCTACGGTTTGGGACCAGCACCGTATTCCAATATCCCTCCGGGGGTTGATGCGATTAACCCAGTGGGTTCTACCGTCTACCATCAGGTTTACGACGCCAACACCGCTACGCAAATCTTCATTCCGCGTACTTCGGACATCTGCTATTTCCGCCGTAAGGCAGGGGGAACCTGGAGTCCATGGGTTCGTTACCTGACTGATTTGCAGCTGGTAGGCACCACTACTGACAGCAGTGCCGGTGTTCCGAATGGTGCCATCATGCAGATCAATGGGAGTGCTGCTGTAAACGTAGGTGTTGCCCTCCGCTTTGCAGACGGTACTCAAATTGTTCGGGCGTTACTCCAATTGGATTACGGTGCAGTAGATATCCTTCAGCGTCAGTTCACTTTCCCCATGGCTTTTGTGGGTAAGCCGGTGGTAACCGCCACCCTGGAACAAGGTACTGTTGCTGACATCAACAACATGCCTTTGCAGGCTCTTGGCCCTGTTATGGTTGCCAGTATCTATGCAGGCAACTGCAACGTGCGTGTCATGCGGTCTCAGGGGTATACTGCTGGTGGATTCGCAGCAGGCTCTAAAATGCTGTGCTCTGTCATCGCAATGGGGTTCTGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f2002867fcd8fbac223ede07337a39893ecee3cbcdca0c9757d00dd7398c010a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6622
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization and Genomic Analysis of vB_Pae_TUMS_PL, A Lytic Bacteriophage against Pseudomonas aeruginosa Kamyab,H., Torkashvand,N., Shahverdi,A.R., Khoshayand,M.R., Sharifzadeh,M. and Sepehrizadeh,Z. 2022-11-10 — GenBank