Protein

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Genbank accession
YP_009639172.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,56
Protein sequence
MALIFNLPMSGPDGSTTITDTTGNFSWSVNGNAQIQSNALLLDGSDDYVSAPVDSRVKIGAISNFRIAFDMRMAAADKGGYRIILDQINTSISAWTWQVYTQDGVLAWSVYNPSYGGINLVGGTVDVADGNWHTVEIIRESGAVRIVLDGVTLATGSDGRDYAVTPIIGIGTRVYQRYPYDYKGSLRNVSLEITEPVVSYGRVSAFVAKSLVGWDRARNRSAIRRSIFYSFPPMETKKVQTVKVTRGVPPWWGPSGSTTQLPTYKLRGRVMQRDPDGVLPDAPVQYARVVLFFRRLHTLVDIQLSDVDGYVQFDNLMPGGQAYYAIAFDPEGAPLQNAVIWDRLTPEPGP
Physico‐chemical
properties
protein length:350 AA
molecular weight: 38472,04880 Da
isoelectric point:6,16109
aromaticity:0,10571
hydropathy:-0,13086

Domains

Domains [InterPro]
DC_2085
STR
4–195
DC_2085
G3DSA:2.60.120.200
STR
8–199
G3DSA:2.60.120.200
IPR013320
STR
10–190
IPR013320
IPR012928
Unmapped
20–138
IPR012928 DC_0374
YP_009639172.1
1 350
Architecture
STR
STR 4-350
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009639172.1
1 350
Domain Start End Length (AA) Confidence
N-terminal 1 45 45 0,0329
Central domain 46 261 217 0,2704
C-terminal 262 350 88 0,2608
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-45
Central
46-261
C-terminal
262-350

Taxonomy

  Name Taxonomy ID Lineage
Phage Xylella phage Salvo
[NCBI] 		1415147 Uroviricota > Caudoviricetes > Casjensviridae > Salvovirus salvo >
Host Xylella fastidiosa
[NCBI] 		2371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009639172.1 [NCBI]
Genbank nucleotide accession
NC_042345.1 [NCBI]
CDS location
range 19888 -> 20940
strand -
CDS
ATGGCGCTCATCTTCAACCTGCCGATGTCGGGGCCGGATGGCTCCACGACGATTACCGACACCACGGGAAACTTCTCGTGGTCGGTGAACGGCAACGCGCAGATTCAATCCAACGCGCTGCTGCTAGACGGCAGCGACGACTACGTGAGCGCGCCTGTCGATAGCCGGGTGAAGATCGGCGCTATCAGTAATTTCCGCATTGCCTTCGACATGCGCATGGCGGCAGCGGACAAGGGCGGCTACAGGATCATCCTCGACCAGATCAACACGTCTATCAGCGCATGGACTTGGCAGGTCTACACGCAAGACGGGGTGCTTGCGTGGAGCGTGTACAACCCGAGCTACGGCGGCATCAATCTTGTCGGCGGCACTGTGGATGTTGCGGACGGCAACTGGCACACCGTCGAAATTATTCGCGAGAGCGGAGCCGTCAGAATTGTTCTTGACGGCGTGACGCTTGCGACAGGAAGTGACGGCCGAGACTACGCGGTTACGCCGATCATAGGTATCGGAACGCGCGTCTACCAGCGGTATCCGTACGACTACAAAGGTTCGCTGCGAAACGTCTCGCTGGAAATCACCGAGCCGGTTGTCTCGTACGGCCGGGTTTCCGCGTTCGTAGCTAAGTCGCTGGTCGGCTGGGATCGTGCGCGCAATCGTTCGGCGATCCGCCGGAGCATCTTCTATTCGTTCCCGCCTATGGAAACGAAGAAAGTGCAGACGGTCAAGGTCACGCGCGGCGTGCCGCCGTGGTGGGGGCCGAGCGGGTCGACCACGCAGCTCCCAACCTACAAGCTGCGCGGCCGAGTGATGCAGCGCGATCCTGACGGGGTGTTGCCGGATGCGCCGGTACAGTACGCGCGCGTCGTGCTGTTCTTCAGGCGCTTGCATACGCTCGTAGACATCCAGCTCTCCGATGTCGACGGCTACGTGCAATTCGATAACCTCATGCCGGGCGGTCAGGCGTACTACGCCATCGCGTTCGACCCGGAAGGCGCACCGTTGCAGAACGCGGTCATTTGGGATCGACTGACACCCGAGCCCGGGCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2da7a1045280f3c885336e8d867cc89ef854b5398f4d83d8350fecc6bc53de7a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7711
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50