Protein

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Genbank accession
USL87109.1 [GenBank]
Protein name
preneck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MQLFTMPVELGQEFRKVTIINFRDIVFEINKGKVALNDHKNKDKVAHKSKQISHFDKDLETILINFKKRLESHIIGANGDGIAELTDSRVSRDGKRFNIFNDRIDYEFQQTEKLFEQKYKEVYGLATRLRNVNDFGADPTGEKDSTEAFEKAFENGGYHVHMTEGTYKVRGIKLPSNSILSGEGKGVTTIKMNDDAPQENLVVTNRDVDGTAKNITVKDFSINGNKFRQEGTLKAAGGSRSSNLRYAGVTNGYIYNIESYDALLHGIDVTYASDDYFYEGDNVRVEEQLESNFIHIDNCETYGFGDDGITTHHSKFLNITNNYSHHPTGGGNNNGIEIDDGSRYVMLSGNTTKQNFGGLEIKAHGTATAPSGVFVNNHLSIEDTRSYNVRHIGHHRAATDVKSKSAHDVVLNNITSIYPYANNTYENVTPRALVISAYDGVVCNNVTCIGDGRFQAGQPAIAVQFMSQNIVISNVNITGFKNAMADMKVFGGNNGGNKIKFANVNIHDSSVNIGIAGGAGVEGFGIYNANLTGSGKGNGIELYNHYAEIVGVDAVNYENAADIAGNKYEVVPTYMNGGASIASTGGGAISEQSAVLASSGGTFAYDKNSFVIASNLGSEAYGSRSGVINSSNSRTKKDGFAQTIMNSRSVESLGNYHFQMGYGDDEKPKASNTKFDVSAFSGNVRTAGYLKSGQDIGDIGEYFESKTGKKIENGYIVTLEGRYIRKAGPDDEPVGIVSGTAALVMGDQLFHHKSKYKKDEFGVVIKSVQMVENVDDEGNIHRELVELPVVNEDYDNQNEEDYIPRSQRDEWCVVGINGQIYTRIDETVENGDKITAMRGVGTKDNANGYYYVEEITTPYDAEKGYGVALVFVK
Physico‐chemical
properties
protein length:873 AA
molecular weight: 95579,57060 Da
isoelectric point:5,44310
aromaticity:0,09278
hydropathy:-0,50080

Domains

Domains [InterPro]
DC_0125
ATT
1–239
DC_0125 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR012334
STR
124–575
IPR012334 IPR021865
IPR011050
STR
128–538
IPR011050 G3DSA:4.10.80.40
IPR024535
ENZ
130–358
IPR024535 DC_0616
IPR006626
Unmapped
212–248
IPR006626
USL87109.1
1 873
Architecture
ATT
STR
RBD
ATT 1-239 | STR 240-642 | RBD 643-873
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
USL87109.1
1 873
Domain Start End Length (AA) Confidence
N-terminal 1 144 144 0,9904
Central domain 145 655 512 0,9895
C-terminal 656 873 217 0,9068
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-144
Central
145-655
C-terminal
656-873

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage Sazerac
[NCBI] 		2944657 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
USL87109.1 [NCBI]
Genbank nucleotide accession
ON550478 [NCBI]
CDS location
range 18841 -> 21462
strand +
CDS
ATGCAACTATTCACTATGCCCGTTGAATTGGGGCAAGAATTTAGAAAGGTAACCATTATTAATTTTAGAGATATTGTGTTCGAAATTAATAAAGGTAAGGTCGCGTTAAACGATCATAAAAACAAAGACAAAGTGGCACATAAAAGTAAACAAATTTCCCACTTTGACAAAGATTTAGAAACAATTTTAATCAATTTCAAAAAACGATTAGAGTCTCACATCATAGGTGCAAATGGCGACGGTATAGCAGAGCTTACTGATAGCCGAGTATCTAGGGACGGAAAAAGATTTAATATTTTCAATGACCGTATTGATTACGAATTCCAGCAAACGGAAAAGTTATTCGAACAAAAGTATAAAGAAGTCTATGGTTTGGCTACTCGTCTAAGAAATGTAAATGACTTTGGTGCTGATCCAACAGGAGAAAAAGATAGTACAGAAGCCTTTGAAAAAGCGTTCGAAAACGGTGGCTATCATGTACATATGACTGAAGGTACTTATAAAGTAAGAGGTATTAAATTGCCTAGTAACTCAATTTTAAGTGGGGAAGGCAAAGGCGTTACAACTATTAAAATGAATGATGACGCCCCTCAAGAAAATCTTGTCGTTACAAATAGAGATGTAGACGGTACAGCTAAAAACATCACTGTTAAAGACTTTAGTATCAATGGTAATAAGTTCAGACAAGAAGGCACATTAAAAGCTGCTGGCGGCTCACGTTCAAGTAACTTACGCTATGCAGGTGTTACTAATGGATATATTTATAACATCGAAAGTTATGACGCGCTATTACATGGTATAGACGTTACATACGCGTCTGATGATTACTTCTATGAAGGAGATAACGTACGTGTTGAGGAGCAATTAGAAAGTAACTTCATTCATATCGACAACTGCGAAACGTACGGTTTCGGAGACGACGGTATTACAACACACCACTCTAAATTCTTAAATATCACAAACAACTATTCACACCACCCTACAGGCGGAGGTAATAATAACGGTATCGAAATAGATGACGGTTCAAGATATGTGATGTTAAGTGGTAATACAACAAAACAAAACTTTGGCGGGCTTGAAATCAAAGCACATGGTACAGCTACAGCGCCAAGTGGCGTGTTCGTTAATAACCATTTATCTATTGAAGATACAAGAAGTTACAACGTAAGACATATAGGACATCACAGAGCCGCAACAGATGTTAAAAGTAAATCGGCTCATGACGTTGTACTTAATAACATTACATCTATTTATCCATATGCAAACAATACATATGAAAATGTTACGCCTAGAGCGTTAGTTATTAGTGCTTATGACGGTGTCGTATGTAACAACGTAACATGCATAGGCGACGGACGTTTCCAAGCAGGCCAACCAGCAATAGCAGTTCAATTTATGAGCCAAAACATTGTCATTAGTAACGTGAACATCACAGGCTTCAAAAACGCTATGGCAGACATGAAAGTATTCGGTGGCAATAACGGTGGTAATAAAATCAAGTTTGCTAACGTTAACATTCACGACTCATCTGTGAATATCGGTATTGCAGGTGGTGCAGGTGTTGAAGGCTTTGGAATTTATAATGCTAACTTAACTGGATCCGGTAAAGGTAACGGAATAGAACTATACAACCACTACGCAGAAATTGTAGGTGTTGACGCAGTTAACTATGAAAATGCAGCAGACATCGCCGGCAACAAATACGAAGTAGTACCAACATACATGAACGGTGGCGCAAGTATAGCTTCAACAGGTGGCGGTGCTATTTCTGAACAAAGTGCAGTTCTAGCGTCTAGTGGTGGAACGTTCGCGTATGACAAAAACTCGTTTGTCATCGCTTCTAACTTAGGTTCAGAGGCTTATGGCTCACGTTCAGGTGTTATTAACTCATCTAATTCAAGAACTAAAAAAGACGGTTTTGCACAAACAATCATGAACTCAAGAAGTGTCGAGTCCTTAGGTAATTATCATTTCCAAATGGGTTATGGCGACGATGAAAAACCTAAAGCCTCAAACACTAAATTCGATGTATCGGCATTTAGCGGTAATGTAAGAACAGCAGGATATTTAAAATCAGGCCAAGACATCGGGGATATTGGCGAGTATTTTGAAAGTAAAACCGGAAAGAAAATCGAAAATGGTTATATTGTAACCTTAGAAGGTCGTTACATTAGAAAAGCTGGTCCAGATGATGAGCCGGTAGGTATTGTTTCAGGTACAGCTGCATTAGTTATGGGGGATCAATTATTCCACCATAAATCTAAATACAAAAAAGACGAATTCGGTGTTGTTATAAAATCTGTTCAAATGGTTGAAAATGTAGATGATGAAGGAAACATACACCGCGAACTTGTAGAGTTACCAGTCGTCAATGAAGATTACGACAATCAAAATGAAGAAGATTACATTCCTAGATCACAACGAGATGAATGGTGCGTTGTTGGTATCAACGGTCAAATTTACACAAGAATAGATGAAACTGTTGAAAATGGCGACAAAATAACTGCCATGAGAGGTGTAGGAACAAAAGACAATGCTAATGGCTATTATTACGTCGAAGAAATCACTACACCATACGACGCAGAAAAAGGATACGGAGTGGCTTTAGTATTCGTAAAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
f05542c461d73449e52b0ba7c7b222939cf644a6fcba4ffdf28ab55f48e75eca
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3027
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50