Protein

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Genbank accession
YP_009188175.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MTATATYDSGTKILAVTGDGLPDPVGYGTFPNLNNPNSVTEQAFSHSFTYRGGEFGVQRTFDDNTYFQSGFVISINISLNDNALFSSQTITPGDHLFFIFSDGRKQRFIFRGTTFTSIAGECWLATDQRLDLIVADSQTIPTGTYTYYDQRNGRIETPLGAIGIAANGVVFFNPSAGAGGNPPVGFNWNAHYENSPVDFGDDSCGGHPENTGQYHYHDSHFIDCYKANSAMANYNDYFGSSQFNGDNMRHPDGHSKILGYCFDGFPIYGPYAYDVPFTASQTTRHMTSSYRTRNIEIENRPDYGTTAQNPPAGSLIQDWEYVDGVGDLDMHNGRFCVTPEFPNGTYAYFISIDAEGDPTFPYMVGSFSRESLNQPANNGAAAPTPPPTGDGGAPPVTPTLQITAQPQSSTAAVNTTVTFTVQAQVSPIPGPISYQWYRSTDNGFAYAAVTGATSNSLSFTALGYMSNYKYKVELRGPAPANNASNSPLMSSVATLTVTGLGGGQGDTDFSSTAVKYDTTTVTYDAT
Physico‐chemical
properties
protein length:526 AA
molecular weight: 56712,22290 Da
isoelectric point:4,58755
aromaticity:0,12928
hydropathy:-0,40285

Domains

Domains [InterPro]
IPR025924
STR
159–353
IPR025924 DC_1032
IPR013783
STR
399–489
IPR013783
YP_009188175.1
1 526
Architecture
STR
ATT
STR
STR 159-353 | ATT 377-443 | STR 444-489 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009188175.1
1 526
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0692
Central domain 11 203 194 0,8849
C-terminal 204 526 322 0,4690
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-203
C-terminal
204-526

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-TIM40
[NCBI] 		1589733 Uroviricota > Caudoviricetes > Pantevenvirales > Libanvirus > Libanvirus ptim40
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009188175.1 [NCBI]
Genbank nucleotide accession
NC_028663 [NCBI]
CDS location
range 87134 -> 88714
strand +
CDS
ATGACCGCTACAGCAACCTACGACTCAGGCACGAAAATACTCGCCGTAACTGGTGACGGACTTCCCGATCCAGTTGGTTACGGCACTTTTCCTAACCTAAACAATCCCAATTCAGTAACTGAGCAGGCATTTAGTCACTCGTTTACTTACCGTGGTGGTGAGTTTGGTGTGCAGAGGACTTTTGATGATAACACTTATTTTCAAAGTGGGTTTGTTATCTCTATTAATATTTCACTTAACGACAATGCGTTATTTTCTTCCCAAACTATTACTCCTGGCGATCATCTATTCTTTATCTTCAGTGATGGTAGAAAACAACGATTTATATTTAGAGGGACAACATTTACATCCATTGCAGGGGAATGCTGGCTCGCTACAGACCAAAGATTAGATCTTATTGTTGCAGACTCACAAACAATACCAACAGGCACATACACATATTACGATCAAAGAAATGGAAGAATAGAAACACCGCTTGGTGCTATTGGTATTGCTGCTAATGGTGTTGTATTTTTCAATCCTAGTGCAGGGGCAGGAGGAAACCCCCCTGTTGGATTTAACTGGAATGCACATTATGAAAACTCACCTGTAGATTTTGGAGATGACTCTTGTGGAGGACATCCAGAAAACACAGGACAATATCACTATCATGATAGTCATTTTATAGATTGTTATAAGGCAAATTCTGCCATGGCAAACTATAACGATTACTTTGGTAGCAGTCAGTTTAACGGTGACAACATGCGTCATCCTGACGGACATTCAAAAATCCTAGGATACTGTTTTGATGGTTTCCCTATTTACGGTCCTTATGCATACGACGTGCCGTTTACAGCATCACAAACAACTAGACATATGACATCTAGTTATAGGACAAGAAATATTGAAATAGAGAATAGACCTGATTATGGCACCACAGCACAAAACCCTCCTGCAGGATCACTGATACAGGACTGGGAATATGTTGATGGTGTAGGTGATTTGGATATGCACAATGGAAGATTCTGTGTAACACCAGAGTTTCCAAATGGGACTTATGCATACTTTATCTCTATAGATGCAGAAGGTGATCCTACCTTCCCTTATATGGTTGGATCATTTAGTAGAGAGAGTTTAAATCAACCTGCTAATAACGGAGCAGCAGCACCTACTCCACCTCCTACAGGAGATGGTGGTGCACCACCTGTTACACCTACGTTGCAGATTACTGCTCAACCTCAGAGCTCTACTGCAGCAGTCAACACAACTGTCACATTTACAGTCCAAGCACAGGTGTCACCAATACCTGGACCTATCTCATATCAGTGGTATAGATCAACTGATAATGGATTTGCATACGCTGCAGTTACTGGAGCTACAAGTAATTCCTTGTCATTCACTGCATTGGGTTACATGTCCAACTACAAATATAAGGTTGAGTTACGAGGACCTGCACCTGCAAACAATGCAAGTAACTCACCATTGATGTCTTCTGTTGCAACACTAACAGTAACAGGACTAGGCGGTGGACAAGGTGATACTGACTTCTCATCTACCGCAGTGAAGTATGACACTACGACAGTTACATATGATGCGACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
19bca478a3b5a47a1270bead21d1e7f0bb837a743ec30682e5da904237bfaf73
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5261
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50