Protein

View in Explore
Genbank accession
YP_010069988.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSNNTYQHVSNESRYVKFDPTGTNFPAEITDVQAAIAAISPAGVNGVPDASSTTKGILFLATEQEVIDGTDNTKAVTPATLATRLSYPNATETVYGLTRYSTNDEAIAGVNNESSITPAKFTVALNNAFETRVSTESSNGVIKISSLPQALAGADDTTAMTPLKTQQLAIKLIAQIAPSETTATESDQGVVQLATVAQVRQGTLREGYAISPYTLMNSTATEEYKGVIKLGTQSEVNSNNASVAVTGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTGGYIQGKRVVTQNEIDRTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNGNDQFGKPRLGVGCTGGYVGEVQKQQMSYHKHAGGFGEHDDSGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPASQRNSKYTLNRPELIGNETRPWNISLNYIIKVKE
Physico‐chemical
properties
protein length:527 AA
molecular weight: 55782,10210 Da
isoelectric point:6,68116
aromaticity:0,06452
hydropathy:-0,38880

Domains

Domains [InterPro]
DC_0176
STR
1–447
DC_0176
IPR015173
STR
246–326
IPR015173 IPR037053 IPR044916
SSF69349
STR
246–326
SSF69349 SSF88874
G3DSA:2.10.280.10
Unmapped
246–286
G3DSA:2.10.280.10 G3DSA:2.160.30.10 IPR011083 IPR027448
YP_010069988.1
1 527
Architecture
STR
ATT
STR
STR 1-329 | ATT 330-400 | STR 401-525 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_G50
[NCBI] 		2502303 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tequatrovirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010069988.1 [NCBI]
Genbank nucleotide accession
NC_054917 [NCBI]
CDS location
range 88023 -> 89606
strand +
CDS
ATGAGTAATAATACATACCAACACGTTTCTAATGAATCTCGCTATGTAAAATTTGATCCAACTGGTACAAATTTTCCAGCAGAGATTACTGATGTTCAGGCTGCTATAGCAGCCATTTCTCCTGCTGGTGTAAATGGAGTTCCTGATGCATCATCAACAACAAAAGGAATTTTATTTCTTGCCACTGAACAGGAAGTTATCGACGGAACTGATAATACCAAAGCAGTTACACCCGCAACGTTGGCAACAAGATTATCTTATCCAAACGCAACTGAAACTGTTTACGGATTAACAAGATATTCAACCAATGATGAAGCGATTGCCGGAGTTAATAATGAATCTTCTATAACTCCCGCTAAATTTACTGTTGCCCTTAATAATGCCTTTGAAACACGAGTTTCAACTGAATCATCAAATGGAGTTATTAAAATTTCATCTCTACCGCAAGCATTAGCTGGCGCAGATGATACTACTGCGATGACTCCGTTAAAAACGCAGCAGTTAGCTATTAAACTAATTGCGCAAATCGCTCCTTCTGAAACCACAGCTACCGAATCGGACCAAGGTGTTGTTCAATTAGCGACAGTAGCTCAAGTTCGTCAAGGAACCTTAAGAGAAGGCTATGCAATTTCTCCTTATACGCTAATGAATTCTACTGCTACTGAAGAATATAAAGGCGTAATTAAATTAGGAACACAATCAGAAGTTAACTCGAATAATGCTTCTGTTGCGGTTACTGGTGCAACTCTTAATGGTCGTGGTTCTACAACGTCAATGAGAGGCGTAGTTAAATTAACTACAACTGCCGGTTCACAAAGCGGAGGTGATGCTTCATCGGCATTAGCTTGGAATGCTGACGTTATCCACCAAAGAGGTGGTCAAACGATTAATGGAACACTTCGCATTAATAATACGCTCACAATAGCTTCAGGCGGAGCAAATATTACCGGAACAGTTAACATGACCGGTGGTTATATTCAGGGTAAGCGTGTTGTAACACAGAATGAAATAGATAGAACTATTCCTGTCGGAGCTATTATGATGTGGGCGGCAGATAGTCTTCCTAGTGATGCTTGGCGCTTCTGTCATGGCGGAACTGTTTCAGCGTCGGATTGCCCATTATATGCTTCTAGAATTGGAACAAGATACGGCGGAAGCTCATCAAATCCTGGATTACCTGATATGCGTGGTCTTTTTGTTCGTGGCTCTGGTCGTGGCTCTCACTTAACAAATCCAAACGTTAATGGTAATGACCAATTTGGTAAGCCTAGATTAGGTGTAGGTTGTACCGGTGGATATGTTGGTGAAGTACAAAAACAACAAATGTCTTATCATAAACACGCTGGCGGATTCGGTGAGCATGATGATTCTGGAGCATTCGGTAATACCCGTAGATCAAATTTTGTTGGTACACGTAAAGGACTTGACTGGGATAACCGTTCATATTTCACCAATGACGGATATGAAATTGACCCAGCATCACAACGAAATTCCAAATATACACTAAATCGTCCTGAATTAATTGGAAATGAAACACGTCCATGGAACATTTCTTTAAACTACATAATTAAGGTAAAAGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
07a2d520b37ff9324c4d2424295387603aae906f0d6c8aaa50386631c37faca9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6844
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Still something new to discover - new insights into E. coli phage diversity and taxonomy Korf,I.H.E., Adriaennsens,E., Dreiseikelmann,B., Kropinski,A., Nimtz,M., Meier-Kolthoff,J.P., Rohde,M., van Raaij,M. and Wittmann,J. 2019-05-17 — GenBank