Protein

View in Explore
Genbank accession
AXG66825.1 [GenBank]
Protein name
putative tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSNTLRLEQIKTSGEQDGKEIVGGSELEFVDTDALANTQIADIKYDSAKGNLVIIKRSGKIITISGLPTVSLFGEGLPGGKGAPGKPGRNGRNGRDGNTGPRGNTGERGLKGKTGQAGNDGLDGPDGDDGYPGPRGNEGPQGPTGPTGPTGPDGPAGEDGPSCISGATGPTGPAPNTTVVVSGGNAPPTDKTVFAWCFPIATTNPIPALPSVPSIGASVSNVDLVATRVVAGNDLFFAQAYLPVNVRGGTGNYSYKWTISDAKDLNIKGNTDRIVQIIFNGKVDQGKTLSLTATLTCVVMDMGQSSRPTATVRSTVRITARNPK
Physico‐chemical
properties
protein length:324 AA
molecular weight: 33069,51620 Da
isoelectric point:8,35499
aromaticity:0,04321
hydropathy:-0,41327

Domains

Domains [InterPro]
DC_0620
STR
2–322
DC_0620
PTHR24637
Unmapped
76–173
PTHR24637
IPR008160
STR
76–134
IPR008160
AXG66825.1
1 324
Architecture
STR
STR 2-322 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA29
[NCBI] 		2283031 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXG66825.1 [NCBI]
Genbank nucleotide accession
MH460461 [NCBI]
CDS location
range 65225 -> 66199
strand -
CDS
ATGAGTAACACTCTACGATTAGAACAGATCAAAACTTCCGGCGAACAAGATGGTAAAGAAATTGTTGGCGGCAGTGAACTGGAATTCGTAGATACAGATGCACTCGCGAACACACAAATCGCCGATATTAAATATGATAGTGCCAAAGGAAATTTGGTAATCATAAAACGCAGTGGGAAGATCATAACTATTTCAGGTCTTCCTACTGTAAGTTTATTCGGTGAAGGTTTACCGGGCGGAAAAGGTGCTCCGGGAAAACCGGGAAGAAACGGAAGAAACGGACGTGATGGAAATACTGGCCCGCGAGGAAATACTGGCGAGCGAGGTTTAAAAGGAAAAACTGGTCAAGCGGGAAATGACGGATTAGATGGGCCAGATGGTGATGATGGTTATCCCGGCCCTCGCGGAAATGAAGGGCCACAAGGGCCAACTGGTCCAACTGGCCCGACTGGTCCGGATGGCCCTGCTGGTGAAGATGGTCCGAGTTGTATTTCTGGCGCAACTGGTCCAACTGGCCCTGCACCAAATACAACTGTTGTTGTGAGTGGTGGAAACGCACCGCCAACTGATAAAACAGTTTTTGCTTGGTGTTTTCCAATTGCAACAACAAATCCTATTCCTGCTTTGCCTTCCGTTCCTTCTATTGGTGCTTCTGTATCTAATGTGGATCTTGTTGCAACCCGCGTGGTTGCTGGCAATGACTTGTTCTTCGCGCAGGCGTATCTGCCTGTAAACGTGCGTGGTGGCACCGGAAACTATTCGTATAAATGGACAATCAGTGACGCAAAAGATTTAAACATCAAAGGCAACACTGATCGAATTGTTCAGATTATTTTTAACGGAAAAGTTGATCAAGGAAAAACTTTATCTCTTACTGCAACGTTAACTTGCGTTGTTATGGATATGGGACAAAGTTCTCGTCCGACTGCAACTGTTCGTTCAACGGTTCGAATCACTGCGCGAAATCCTAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
67ceb1986339139535d5b424f767e8bc4179bae84eece2ddd8fb553752b90fd5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6812
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank