Protein

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Genbank accession
YP_009789235.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAIYDLGTASLAANGEVTGVGTTWKAPLTLIRVGATIVFKTEPVKIYTISEIISDTQINVYNPNSETVPAGTGYAILAHDGITVQGLAQDVAETLRYYQSRETEVADAVDAFNNFDFNDFESKVTQVNNQYGDVVNMSSQVAQNAAQVAGDMASAAASAGLAMSSEQAARGYAESLSGALISLSGALISSFESGGVIESRNQQMIWLDSGKPKSYVWMGDLPKTVPENSTPYSSGGIGDSSWSELGSKGYVSFYDFGCVGDGITNDISGINRAINYAKSKNLKIKQNDGVFLVSGSDYIDIGSLSADFTGSVIKPSSSWTGQITITNGQPTTYDASSSVVSSFNSMSNESRAAGSNLFDSISENRDLDGCFIVFYTNQDMYTYRDSVQKRIELNRVYNRGYLENSLKYDLGNNVTSVRALKINKTTQEIKGLTIDESLSTRYQIVYVNNSTRLLIKDISFINKPITQVFSDTRLAIANSYDITVDGLFAESVADARDSSGELYSYALSIGESMNVRIMNARVNGKGWGANGSNNCANVTFENCDLSRIDFHMPFHNYLKIENCNIGARGVVVTGLGDLHIRDSAFNASRYTNGNIITTRADAGGFFDGNLYMDNITFTGTRSTSLTGTGLINGISYEGNGPVAGSPIKSTLFNSVRIKGLNFKSGNYSSHPGNLFYSSRDGALLFPSDVSISDVNMSAFPSSASLGLTIDFSRFKGPFSDMTNSESSLTGRFTTNISIKGILSNNIVFMGANSLHNPNVSIYDLSSPVGSSRYPIFETNQRGSYYMVNCNVERLRAYYGSDPNGPVAIKFVGGIVKSTSGTTSPVDGSVDHDISFINTRFVCNFNGQSQSTLPITTGISRMALLSSCDFFDISGVRLNGLNIPVKESTSVTVGFGFRLNQDLVVTTGFSGTNTFTANKISVISDSPQRFATGTSSTGAISFALSGTLVSSTTISTTSGNQLRSVKLI
Physico‐chemical
properties
protein length:967 AA
molecular weight: 103679,09190 Da
isoelectric point:5,20932
aromaticity:0,09411
hydropathy:-0,13454

Domains

Domains [InterPro]
DC_1200
STR
1–509
DC_1200 DC_1183
G3DSA:2.10.10.80
ATT
186–251
G3DSA:2.10.10.80 IPR012334
IPR040775
RBD
189–246
IPR040775 IPR011050
YP_009789235.1
1 967
Architecture
STR
ATT
STR
RBD
STR 1-185 | ATT 186-251 | STR 252-674 | RBD 675-966 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009789235.1
1 967
Domain Start End Length (AA) Confidence
N-terminal 1 265 265 0,9936
Central domain 266 906 642 0,9843
C-terminal 907 967 60 0,8936
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-265
Central
266-906
C-terminal
907-967

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS-IME253
[NCBI] 		1933412 Uroviricota > Caudoviricetes > Drexlerviridae > Rtpvirus > Rtpvirus IME253
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009789235.1 [NCBI]
Genbank nucleotide accession
NC_047810.1 [NCBI]
CDS location
range 39711 -> 42614
strand -
CDS
ATGGCAATTTATGACTTGGGAACCGCATCATTAGCTGCAAACGGCGAGGTGACTGGTGTCGGGACAACATGGAAAGCACCGCTTACACTGATTCGCGTAGGTGCCACCATTGTATTTAAAACTGAGCCAGTAAAAATTTACACCATCTCTGAGATCATCAGCGATACGCAGATTAATGTTTATAACCCTAATTCTGAAACTGTTCCTGCTGGAACTGGTTACGCTATTCTTGCTCATGATGGGATTACCGTTCAGGGATTAGCTCAAGATGTTGCTGAGACTCTTCGTTACTATCAGTCACGTGAAACTGAGGTTGCTGATGCAGTTGATGCATTTAACAACTTTGACTTTAATGATTTTGAATCTAAAGTAACACAGGTTAACAATCAGTATGGCGATGTTGTAAACATGTCATCACAGGTTGCGCAGAATGCTGCCCAGGTAGCAGGTGATATGGCTTCTGCTGCAGCGAGTGCTGGATTAGCAATGTCATCAGAACAAGCTGCACGGGGTTATGCGGAATCATTATCTGGTGCCTTAATTTCATTATCTGGTGCCTTAATTTCATCATTTGAGTCCGGAGGTGTAATAGAGTCAAGAAATCAACAAATGATATGGCTTGACTCCGGTAAGCCAAAGTCATACGTATGGATGGGAGATCTACCTAAGACAGTCCCGGAAAACTCGACACCATATTCTTCTGGTGGGATTGGTGATTCTTCGTGGTCTGAACTAGGATCTAAAGGTTATGTTAGTTTCTATGATTTTGGTTGTGTTGGTGATGGTATTACTAATGATATTTCAGGTATAAATCGAGCGATAAACTACGCAAAATCCAAAAATCTAAAGATAAAGCAGAATGATGGTGTTTTTCTTGTTTCTGGTTCCGATTATATTGATATTGGTTCATTGAGTGCTGATTTTACAGGCTCTGTTATAAAACCATCATCCTCATGGACCGGGCAGATAACTATAACCAACGGGCAACCTACAACTTATGACGCTTCGTCATCTGTTGTTTCATCTTTTAACTCCATGTCTAATGAATCAAGAGCTGCTGGAAGTAATTTGTTCGACTCTATATCTGAAAATCGTGACCTTGATGGTTGTTTTATTGTTTTTTATACAAATCAGGACATGTACACATATAGGGATTCTGTTCAGAAAAGAATTGAACTCAATAGGGTTTACAATAGGGGTTATCTGGAGAACTCACTGAAGTATGATCTTGGAAATAATGTTACATCAGTTAGAGCCTTGAAGATAAACAAGACAACTCAGGAAATCAAGGGTTTAACTATAGATGAAAGTCTTTCGACACGGTATCAGATAGTTTATGTTAATAATTCTACAAGGTTGTTAATAAAAGATATTTCCTTTATTAACAAGCCGATAACGCAAGTGTTTAGCGATACAAGGTTGGCAATAGCTAACTCATATGATATCACAGTTGATGGTCTTTTTGCCGAGTCTGTTGCAGACGCAAGAGATTCTTCTGGTGAGCTTTACTCATACGCCTTATCAATAGGTGAATCAATGAACGTAAGGATTATGAACGCAAGGGTTAACGGTAAAGGATGGGGCGCAAATGGTAGTAACAACTGCGCAAACGTAACTTTTGAAAATTGTGATCTAAGTAGAATTGACTTTCACATGCCTTTTCATAACTACCTCAAGATTGAAAACTGCAATATCGGTGCCCGTGGTGTTGTTGTTACTGGTCTTGGCGATTTGCATATAAGGGATAGTGCATTTAATGCGTCTAGATATACGAATGGGAATATCATAACAACAAGGGCGGACGCTGGAGGTTTCTTTGACGGAAACCTTTACATGGATAACATTACTTTTACAGGCACAAGAAGTACTAGCCTGACCGGGACGGGTTTGATAAATGGAATTTCTTATGAAGGAAATGGACCTGTAGCTGGCTCACCAATAAAGAGCACTCTGTTTAACTCAGTTAGGATTAAGGGCCTTAACTTCAAGTCAGGAAACTACAGTTCTCATCCTGGTAATTTATTCTACTCAAGTAGAGATGGTGCGCTGCTTTTCCCTTCTGACGTTTCAATATCAGATGTTAACATGTCGGCTTTCCCTTCATCTGCTAGCTTGGGACTTACTATTGATTTTTCAAGGTTTAAGGGGCCATTCTCGGACATGACAAATTCTGAAAGCTCATTGACTGGAAGGTTTACTACCAACATAAGTATAAAGGGGATTTTATCAAATAATATCGTTTTCATGGGTGCTAACAGTCTTCATAACCCTAACGTTTCTATATATGATCTCTCTTCACCTGTCGGAAGCTCGAGATACCCTATATTTGAGACAAACCAGAGGGGGAGCTATTACATGGTTAATTGTAATGTTGAAAGGCTTAGAGCTTACTATGGTTCAGACCCAAATGGACCTGTGGCAATAAAATTTGTTGGCGGTATTGTTAAGTCAACATCTGGTACGACCTCTCCGGTTGATGGCTCTGTTGATCATGATATTAGTTTCATTAACACAAGATTTGTATGTAACTTCAATGGACAGTCTCAGAGTACGCTACCAATAACAACAGGCATTTCAAGAATGGCGCTTCTTTCTTCTTGTGATTTCTTTGATATCTCAGGTGTGCGTCTAAATGGGCTTAACATTCCTGTGAAAGAGTCAACCTCTGTTACTGTTGGATTTGGATTTAGACTCAATCAGGATTTGGTTGTAACTACTGGTTTTTCTGGCACTAATACTTTTACAGCAAATAAGATAAGTGTTATAAGCGATTCACCTCAAAGGTTTGCTACTGGAACCTCATCGACTGGAGCTATTTCGTTTGCATTGTCTGGGACGTTAGTTAGTTCAACAACAATATCTACAACTTCTGGTAATCAGTTAAGATCTGTTAAATTGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f9f897f4536e400e50e44cdcc5b22bad49d45c411c51ee53bdf35a79d1d5f9dc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7093
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
An efficient strategy for bacteriophage contamination control in bacterial fermentation Xing,S., Sun,Q., An,X., Mi,Z. and Tong,Y. 2011-06 — GenBank