Protein

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Genbank accession
YP_009821336.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAAVSSLTKLIRQRAQNVTYNSTNVQAQLDSLPIWSLADPRWGADATGATDSTARIQACFNYVGSRGGGTVYIPATPGDGAAANNQGYKVSGSIEVPAFVNIQGEGFSSCLRASTTLPGGLLRLKAHGSVGGRFIRDIRLSGNNGGTGIGTDLEATDTETKHIYGWMLEDVFIESFEWGLQLQGMWHSTLLNVTTSACRVGLHLWGQNVSINILGSHFRRDSRDRKDTFGIVIQPRVYAWSPDQTRGSRSETIVMGGEFMCIGQEYGIYVHDVLDLQISNMDLDYIFLIAIAILNVNGGCNISDGWIAADSTGTTQFSGIVFANPLDVQQMKTVRGLHMNLANNNPLANNQGVAIASQKVGKVAIRDCTFSGGWAGVDIYQNTAGVIIDGNIFAGNTLSLRSSGMVTITNNRLDNVTETGKAAVNTYMGNNNGKFTDGIVQVSMPASANSGSLQLPNPVAGATYVAELMGNNSAQTSDFAWVEGSVVRVSRATPVAVVLNAYVRVTML
Physico‐chemical
properties
protein length:508 AA
molecular weight: 54212,42270 Da
isoelectric point:5,99449
aromaticity:0,07677
hydropathy:-0,02736

Domains

Domains [InterPro]
IPR012334
STR
35–508
IPR012334
IPR011050
STR
42–220
IPR011050 IPR011050
YP_009821336.1
1 508
Architecture
STR
STR 35-508
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009821336.1
1 508
Domain Start End Length (AA) Confidence
N-terminal 1 51 51 0,9695
Central domain 52 433 383 0,9934
C-terminal 434 508 74 0,9829
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-51
Central
52-433
C-terminal
434-508

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Buco
[NCBI] 		2530183 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Bucovirus
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009821336.1 [NCBI]
Genbank nucleotide accession
NC_048174 [NCBI]
CDS location
range 40704 -> 42230
strand +
CDS
ATGGCGGCAGTATCTTCCCTGACGAAGTTAATCAGGCAGCGGGCCCAGAATGTCACTTACAATAGCACGAACGTGCAGGCACAGTTAGATTCCCTACCCATCTGGTCTCTTGCAGACCCCCGCTGGGGAGCAGATGCAACCGGGGCTACTGACAGCACTGCGCGTATTCAGGCATGCTTCAACTACGTAGGTAGCCGCGGTGGCGGTACAGTGTATATCCCAGCTACCCCAGGCGACGGAGCAGCCGCAAACAACCAGGGTTACAAGGTCAGCGGCAGTATTGAGGTTCCTGCCTTTGTTAATATCCAGGGTGAGGGATTCAGCTCCTGCCTCCGGGCAAGCACAACTCTCCCAGGTGGACTGTTACGGTTGAAGGCGCATGGCAGTGTAGGGGGACGCTTCATCCGGGACATTCGCCTCTCTGGTAACAACGGCGGAACTGGTATTGGCACCGACCTAGAGGCCACTGATACTGAGACTAAGCACATCTACGGATGGATGCTGGAGGACGTATTTATTGAGAGCTTCGAGTGGGGCTTGCAGTTGCAGGGTATGTGGCACTCTACGCTGTTGAACGTTACAACCAGCGCCTGCCGTGTAGGCCTGCACTTGTGGGGGCAGAACGTCTCTATCAACATTCTGGGCTCGCACTTCCGCCGGGACAGCCGGGACCGTAAGGACACCTTTGGTATTGTGATTCAGCCGCGTGTATACGCCTGGAGCCCGGACCAGACCAGGGGCTCTCGTAGTGAGACTATTGTGATGGGCGGTGAGTTCATGTGCATTGGGCAGGAGTACGGTATCTATGTACATGACGTGCTGGACCTCCAGATTAGTAATATGGACCTGGACTACATCTTCTTGATCGCCATCGCGATTCTGAACGTAAACGGGGGCTGCAATATCTCCGACGGGTGGATAGCCGCAGACAGCACCGGCACTACTCAATTCTCTGGAATAGTGTTCGCGAATCCGCTGGATGTACAGCAGATGAAGACCGTACGCGGACTGCACATGAACCTCGCTAACAATAACCCGTTAGCTAATAACCAGGGAGTTGCTATAGCCAGTCAGAAGGTAGGCAAGGTGGCTATCAGGGATTGTACCTTCTCCGGTGGCTGGGCAGGTGTCGACATTTACCAGAATACTGCGGGTGTAATCATTGATGGCAATATCTTTGCCGGTAACACCCTGTCCCTGCGTAGTAGCGGCATGGTGACCATTACTAACAACCGGCTGGACAATGTAACGGAAACCGGTAAGGCTGCTGTGAATACTTACATGGGCAATAACAATGGCAAGTTCACGGATGGGATTGTGCAGGTATCTATGCCAGCAAGCGCCAACTCCGGCTCCTTGCAGCTGCCTAATCCGGTGGCTGGCGCTACCTACGTAGCTGAGCTAATGGGAAACAACAGCGCGCAGACTTCTGACTTTGCCTGGGTGGAGGGGTCTGTTGTAAGAGTTAGTCGGGCGACTCCGGTTGCGGTGGTTCTAAATGCTTATGTACGCGTAACTATGCTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3480fa5ddd90ef77296e6c160ac4bfe0f89fad266fca9fad52e2aca23bfb1d03
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8083
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A cornucopia of Shigella phages from the Cornhusker state Doore,S.M., Schrad,J.R., Perrett,H.R., Dover,J.A., Schrad,K.P., Dean,W.F. and Parent,K.N. — — GenBank