Protein

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Genbank accession
XKI62099.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MANVIKTVLTYPLDGSTYDFNISFEYLARKFIVVTLIGADRRVLTLNTDYRFATRTTISLIKAWGPADGYTTIELRRVTSATDRLVDFTDGSILRAYDLNIAQIQTMHVAEEARDLTADNLGVNNDGDLDARGRRIVNVKDPTLPQDAATKNYVDLMSGGEGSAGKALEELAKPNGAYKIGLGDSTVGDIIGQRTYIVGITGQSNAAGANAGGPNPANPNIKVWDGVTNSWGSSDYTKPPFSRGNPHGNNGHNNIGLAYAHRLIDEHKADQVFVIFDAVGGKSIEEWVDNDKDSPRYKGFADKVVTALATPEVALTGRTKLDCLIWAQGEGNATTDTMQDYLGKFKKLDEQFRSETWMTETTPMYVMGMSGLHTRYQVWQAQIAYCENSNRNCVYVNSTGLKTQYDETGKDDYTHWLGNSLWLHGYERIWEASHGKGMTHRTQTPPFYSRGSGPWSGQPDAVALFSSLVSIDSATNKFPINGPSAQGSITWGLNCKADGNYTMAGGHTVSTANTASHSFAWGRTISIGEGANYSAGFGKDNVLNGNYQFAVGRGHDLNGDATQALGRFSKYTTPQENPVILQVGVGSSNSVRKNGLTVRGDGAVEIYTNTKHDPSQNTEIVFQYATNTSVVLKMRGTDGVVRKAVITLTGEEQTQE
Physico‐chemical
properties
protein length:656 AA
molecular weight: 71372,39320 Da
isoelectric point:5,91128
aromaticity:0,08994
hydropathy:-0,45412

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604 IPR052940 DC_0394
DC_1510
STR
1–452
DC_1510 IPR011049
IPR036514
STR
200–440
IPR036514 IPR011049
IPR005181
ENZ
200–408
IPR005181
SSF52266
STR
200–436
SSF52266
XKI62099.1
1 656
Architecture
ATT
STR
RBD
STR
ATT 1-131 | STR 132-452 | RBD 453-479 | STR 480-649 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKI62099.1
1 656
Domain Start End Length (AA) Confidence
N-terminal 1 267 267 0,7186
Central domain 268 473 207 0,7415
C-terminal 474 656 182 0,6193
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-267
Central
268-473
C-terminal
474-656

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CHRF_10025
[NCBI] 		3377759 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhi
[NCBI] 		90370 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKI62099.1 [NCBI]
Genbank nucleotide accession
PQ336904.1 [NCBI]
CDS location
range 27155 -> 29125
strand +
CDS
ATGGCCAACGTAATTAAGACCGTTTTGACTTACCCACTGGACGGTTCTACCTACGACTTCAACATTTCATTTGAGTACCTAGCCCGTAAGTTCATAGTGGTGACTCTCATTGGGGCTGATAGGCGTGTCCTTACACTCAACACAGATTATCGTTTTGCTACACGAACCACCATCTCACTGATCAAGGCTTGGGGTCCTGCCGATGGTTACACCACTATTGAGTTACGAAGAGTGACCTCAGCGACGGACCGTCTGGTGGATTTCACTGATGGTTCGATTCTCCGCGCTTATGATCTCAACATCGCTCAGATTCAGACGATGCACGTAGCAGAAGAGGCACGAGACCTCACTGCGGATAATCTCGGCGTTAATAATGATGGGGACTTAGACGCACGTGGTCGTCGTATTGTTAACGTAAAAGACCCTACACTACCGCAGGACGCCGCAACGAAAAACTACGTGGACTTAATGTCTGGCGGTGAAGGCTCCGCTGGTAAGGCTCTTGAAGAGCTAGCTAAACCGAATGGTGCCTATAAGATTGGACTGGGCGATAGTACAGTCGGAGACATTATCGGTCAGCGCACCTACATAGTCGGTATCACTGGGCAATCCAATGCTGCAGGTGCCAATGCCGGTGGTCCAAACCCAGCCAATCCGAACATCAAAGTGTGGGATGGTGTGACAAACTCTTGGGGCTCTAGTGATTACACCAAGCCACCTTTCTCACGAGGGAATCCTCATGGAAACAATGGTCACAACAATATTGGCCTAGCGTACGCTCACCGACTCATTGATGAACATAAGGCAGACCAAGTGTTTGTCATCTTTGATGCAGTTGGTGGTAAGTCTATAGAGGAGTGGGTGGATAACGATAAGGACTCTCCCCGTTACAAGGGGTTCGCAGACAAGGTGGTCACCGCACTGGCTACCCCTGAAGTTGCCTTGACGGGGCGCACCAAGCTAGACTGCCTCATCTGGGCACAGGGCGAAGGCAACGCCACCACCGATACTATGCAGGATTACCTAGGGAAGTTCAAGAAGCTTGACGAGCAGTTCCGCTCGGAGACCTGGATGACGGAGACTACTCCTATGTACGTTATGGGAATGTCCGGACTACACACTCGGTACCAGGTATGGCAAGCACAAATAGCGTACTGTGAGAACTCAAACAGGAACTGTGTGTATGTCAACTCTACGGGCCTTAAGACTCAGTATGATGAGACAGGCAAGGATGACTATACACACTGGCTTGGGAACTCTCTATGGCTCCACGGGTATGAGCGCATCTGGGAAGCATCGCATGGTAAAGGTATGACCCATCGTACTCAGACGCCTCCATTCTACTCGAGAGGGAGTGGCCCCTGGTCTGGGCAGCCAGACGCTGTCGCATTATTTAGTTCTTTAGTGAGTATCGACTCTGCAACCAATAAGTTCCCCATCAATGGTCCATCGGCCCAAGGCTCAATCACGTGGGGTTTAAACTGTAAGGCAGATGGTAACTACACAATGGCAGGCGGCCACACCGTGTCTACAGCAAACACAGCCAGTCATTCGTTTGCATGGGGGCGGACTATCTCCATTGGCGAAGGTGCTAATTATTCGGCAGGATTTGGTAAAGATAACGTGCTAAACGGTAACTATCAATTCGCTGTTGGAAGGGGTCACGATCTCAATGGGGATGCGACCCAGGCACTAGGCCGCTTCTCTAAGTACACTACACCACAGGAAAATCCTGTGATTCTCCAAGTTGGGGTAGGTTCCTCAAACAGTGTGCGCAAGAATGGGCTAACTGTTAGAGGTGATGGTGCTGTAGAGATTTACACCAATACTAAACATGACCCGTCTCAAAACACTGAGATTGTGTTTCAGTATGCCACTAATACGTCTGTAGTGTTAAAGATGCGTGGTACTGATGGTGTGGTCCGTAAGGCTGTTATAACGCTAACGGGGGAGGAGCAGACGCAGGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1d37f87c3d4f6ca3f2d9c3ccc99843242f24abf3b967d05e3974cf9b1525c53d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7691
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences of bacteriophages that infect Salmonella Typhi from Bangladesh Islam,S., Kabiraj,R., Sarkar,H., Dev,P.C., Tanni,A.A., Keya,D.P., Malakar,A.R., Tanmoy,A.M., Saha,S.K., Hooda,Y. and Saha,S. — — GenBank