Protein

View in Explore
Genbank accession
QAX96515.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTDIYLKKVATGSGNGSGWDNAKAFTDSTALRVDLETLRAGDTLYIGNDFGKRDWLETDILMIVNAVNGTEDDPITFCGSAVTDTTELHAAAKGKGPIFHGGAEAPMRLGDSKGVDFLRVERDHYKFLGLNLVNAGYFLTIRNRPVTGITVADCQTYGTELVFSCGAGDSDVTGLDVSNFIAGNVSGGFGLFRNGKKLSFSDVHVSHSEETTDVFGLKFGAAGDASSVVEEILVRDSSFTGGYNFNGSPSYVQGDGIIAEIGTSEIDIDNVRISLYGDAAIDLKSTNARIKRADIQRCKYGIKLWGLGENLIENSIVSNCSLGAIQCIADIVAKNSTFKGTADSKCLLNLTKNNLDGDKLGELTLEDCVLEYPDPSRLIYGYAGNKVHMKNCMVNGVLIKETKFLLPAQGSFGIVDDLTDF
Physico‐chemical
properties
protein length:421 AA
molecular weight: 45127,21810 Da
isoelectric point:4,80604
aromaticity:0,08314
hydropathy:-0,08907

Domains

Domains [InterPro]
IPR012334
STR
5–355
IPR012334
IPR011050
STR
18–397
IPR011050
IPR039448
ENZ
251–374
IPR039448
QAX96515.1
1 421
Architecture
STR
STR 5-397 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QAX96515.1
1 421
Domain Start End Length (AA) Confidence
N-terminal 1 17 17 0,3571
Central domain 18 410 394 0,9806
C-terminal 411 421 10 0,5086
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-17
Central
18-410
C-terminal
411-421

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VmeM-Yong XC32
[NCBI] 		2500767 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio mediterranei
[NCBI] 		689 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QAX96515.1 [NCBI]
Genbank nucleotide accession
MK308675.1 [NCBI]
CDS location
range 203409 -> 204674
strand +
CDS
ATGACTGATATCTATCTAAAGAAAGTAGCGACCGGTTCTGGTAACGGTTCGGGCTGGGACAATGCTAAAGCGTTTACGGACTCCACGGCTTTAAGAGTGGACCTAGAGACCTTACGCGCAGGCGATACTCTCTATATCGGTAACGACTTCGGTAAACGTGACTGGCTAGAAACAGACATCCTGATGATAGTCAACGCTGTGAACGGTACAGAAGATGACCCTATCACTTTCTGTGGCTCTGCCGTAACAGACACTACGGAACTACATGCGGCAGCAAAAGGTAAGGGCCCTATCTTCCATGGCGGGGCAGAGGCGCCGATGCGCCTAGGTGACTCAAAAGGAGTAGACTTCCTCAGAGTTGAAAGAGACCACTATAAATTCTTGGGATTAAACCTGGTCAACGCAGGTTACTTCCTGACAATACGCAATCGTCCAGTCACTGGGATAACGGTGGCAGACTGTCAGACCTACGGAACGGAATTAGTTTTCTCTTGCGGCGCAGGAGACTCGGACGTTACTGGCTTGGATGTCTCCAACTTCATAGCTGGTAATGTCTCTGGTGGTTTTGGTCTCTTTAGAAACGGTAAGAAATTAAGTTTCAGCGACGTGCATGTCTCCCATAGTGAGGAGACGACTGACGTCTTCGGACTAAAGTTCGGTGCAGCCGGAGATGCGAGCAGCGTAGTCGAAGAGATACTCGTCCGCGATTCTTCTTTTACAGGCGGCTATAACTTTAACGGCTCGCCTTCTTACGTTCAGGGCGACGGCATTATTGCCGAGATTGGCACTTCTGAAATAGACATCGACAACGTGCGCATTAGTCTATACGGCGATGCCGCAATTGACCTGAAGTCCACCAATGCCAGAATCAAACGTGCGGACATCCAGAGATGTAAGTACGGCATCAAGCTGTGGGGCCTTGGCGAGAACTTAATCGAAAACTCCATCGTGAGTAACTGTTCCTTAGGTGCCATTCAGTGCATCGCTGACATCGTGGCTAAGAACAGTACCTTTAAGGGCACGGCCGACAGTAAATGCTTATTGAACCTAACGAAGAATAACCTCGACGGGGATAAGCTGGGCGAACTAACCCTGGAAGATTGCGTCCTGGAATATCCAGACCCAAGCCGTCTTATCTACGGCTATGCCGGTAACAAAGTACACATGAAGAACTGCATGGTGAACGGAGTGCTCATTAAAGAGACTAAGTTCCTTCTACCGGCGCAGGGCTCATTCGGCATTGTAGATGACCTAACTGACTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5fcb56570a998ab732f75445d0abe01718bfbfae416180e2527b58818866e8a9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8387
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50