Protein

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Genbank accession
XNL98488.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MRSVTPDELICGKLFKGSNGKYVRNGDNVTAEDTHLRVPIDGKPAIVRMSSTVSGVVSMLTETSATIGTDEITLHQLKNGGYQATSTELSGIIPLEGEQWFNTTTNRIIVGDGVTAGGRDVTLDDGGYVEYYGASETASPEENLAAYNAAITFCLITGSTLKSLEGSIHIVSSTVDARTVRNVDLKAQLNGNGDFVTLRLGGYSTNQQQYYTQKVFKVNRGGAAPAVQIRGSNKNNIYIGEASIVEVYADNSDALGGSDEYCAYNNVYIQSCTELKLGTNMSPVGTNPKLLVQWINENRFYLSFCQNITVDGTYDHNGNTFLYPNMESSSSKLWFKRGRGNLVWGVRGEDDLNIQFDSQTANNTVICDWTSYANGGWNKAASIVDTGLNNCVKNWNSLFQDILPVMSFSAYSYKKNGANESNLLGVANLTQNANSLNRPAYAAIYTSPRINIDNNHVFFNAMVYGKSSGGITIKVDGYAADGSLITPNDGDVYFRGDTNEDAKFGEINTTITNKSGNAVFWVNKSTVAWVVITVSASSAGCTFESFSLLATSADDTSNRMLSSSLMIPNIGA
Physico‐chemical
properties
protein length:572 AA
molecular weight: 61798,89740 Da
isoelectric point:4,99026
aromaticity:0,09266
hydropathy:-0,25192

Domains

Domains [InterPro]
DC_0194
STR
3–571
DC_0194
G3DSA:2.10.10.30
ATT
83–125
G3DSA:2.10.10.30
XNL98488.1
1 572
Architecture
STR
ATT
STR
STR 3-82 | ATT 83-125 | STR 126-571 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XNL98488.1
1 572
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9817
Central domain 141 399 260 0,9867
C-terminal 400 572 172 0,9616
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-399
C-terminal
400-572

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VcaP_R25D
[NCBI] 		3374688 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
[NCBI] 		1224742 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio > Vibrio campbellii

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XNL98488.1 [NCBI]
Genbank nucleotide accession
PQ464789.1 [NCBI]
CDS location
range 40126 -> 41844
strand +
CDS
ATGCGGTCAGTCACTCCTGATGAATTGATTTGTGGTAAATTGTTTAAGGGGTCGAATGGCAAATACGTTAGGAATGGTGATAATGTTACAGCAGAGGATACACACCTTCGGGTTCCTATAGATGGTAAACCTGCGATTGTTAGGATGTCATCTACTGTTAGTGGTGTAGTTTCCATGTTAACAGAAACAAGCGCAACAATTGGCACAGATGAGATAACACTTCATCAACTTAAAAACGGCGGGTATCAAGCAACAAGCACAGAATTAAGCGGTATCATACCATTAGAGGGTGAGCAGTGGTTTAATACCACGACCAATAGAATTATCGTGGGAGACGGAGTCACCGCAGGTGGGCGTGATGTGACGCTTGACGATGGTGGCTACGTAGAATACTACGGTGCGAGTGAGACAGCGTCACCGGAAGAAAATCTAGCGGCGTACAATGCGGCGATTACATTCTGTCTAATTACTGGCTCAACACTGAAATCATTAGAGGGTTCAATACACATTGTATCTTCCACTGTTGATGCTCGTACTGTTCGTAACGTTGACTTAAAAGCTCAATTGAATGGCAACGGTGATTTTGTAACCTTGCGATTAGGTGGTTACTCAACCAATCAACAGCAGTACTACACGCAGAAGGTTTTTAAAGTTAACCGAGGTGGTGCCGCTCCAGCGGTGCAAATACGGGGGTCGAATAAAAATAACATCTACATTGGCGAGGCTTCCATCGTTGAGGTGTACGCAGACAACAGCGACGCGTTAGGTGGGTCTGATGAATACTGCGCTTACAACAACGTGTACATACAGTCGTGTACCGAGTTAAAACTAGGCACGAACATGTCGCCAGTGGGTACAAACCCTAAGCTACTAGTGCAGTGGATTAATGAGAACCGATTCTATTTGTCATTCTGCCAGAACATCACGGTCGATGGCACTTACGACCACAACGGTAATACATTCCTTTACCCTAATATGGAAAGCTCATCTTCTAAACTGTGGTTTAAAAGAGGTAGAGGCAATCTGGTGTGGGGCGTACGAGGTGAAGATGACCTTAATATACAATTTGACAGCCAGACTGCAAACAACACTGTTATATGCGACTGGACGAGCTACGCGAATGGAGGCTGGAACAAAGCGGCAAGCATTGTCGATACAGGACTTAATAACTGCGTTAAGAACTGGAATTCCCTATTTCAAGATATATTACCCGTTATGTCTTTTAGTGCTTATAGTTACAAGAAGAACGGAGCGAATGAGTCAAACTTGCTAGGCGTTGCTAACTTGACTCAAAATGCAAACTCACTAAACAGACCTGCATACGCAGCGATTTACACTAGCCCACGTATCAACATAGATAACAATCATGTTTTCTTTAACGCGATGGTTTACGGGAAAAGCTCAGGCGGTATAACTATTAAAGTTGACGGATATGCCGCCGACGGTTCTTTAATAACCCCGAACGATGGTGATGTGTACTTTAGGGGTGACACAAACGAAGACGCCAAGTTCGGAGAGATTAACACTACCATCACTAATAAATCCGGTAATGCTGTATTTTGGGTGAACAAGTCTACCGTCGCTTGGGTTGTGATTACTGTGTCCGCATCAAGTGCTGGTTGCACATTCGAAAGCTTCTCGTTACTAGCGACAAGCGCAGATGACACAAGCAATAGAATGCTTTCTTCTTCATTGATGATTCCAAATATAGGAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b71bc0194d72bc371bbca7b7dd18f1617c856709d62623e92831ca1d0b7703cf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6294
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50