Protein

View in Explore
Genbank accession
XPP57004.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MTKITVGTPVTAPLTPGRDDTNVWPTHLAKYGAGGLEVVETTSDRDGISDARKMDKAVLVRSDDGGRAALYEWSSGGWNKVDIGDFSGMTITDGANVFNDIVEIKLANMTANQYPNDSIDSVTLTAEGSLDWATMGDPSSGSRATSVLVEPPLQTYPDPDNTGVTRLRVKEGSYEPMKAPGYLAYVDFPEKVIGKLGYHTLGHYDSAIWPTDTVVSGGGLIPTIADKKNIGLQEYDGKDPNKTGGTDFLVAFRVAFKGHAVNAGKIKAYLAKQPAPGTSDSADYLRDVNGELLVREVNYKAGDEYGHIEVLGIVNAKGLTNMSMHIEHNFSDSLLIEERAVGLSGVMVQALESKSKTGAALMQYEIDTKQNIEFNKIYYGDSIMDFNWEATHGLPMEEIQAGVGANLPDGFHFKNLSNIYISSKDDHIYVHDAGTVCDFSLGKIFNAFDTRSLHGKEINVKATIIDKDAPFTIGVVKWTGKPDQYTNNIFSSRNSATVVFDAGWELVGSLFFPSESVTGDHTLTKKFTVPSDANNFAVIIYPGVPNSPLTLKIKDFDVDVVNPFYGYEMYVAGKLNELHLEEDTEFAHFSQANENYVSLRYTIGKSADGDPMPVGVLRKGKADITLDPSINKIVGSAATSGEGGLKFGKDGKAIVDTTLWIHSEQPEKTASDVTFWYELVNSHGIATKIIPSETTFKVSGDSSGDYSMKEFSLDVITGDRIVLKASADKDDGAFIQSNSPAHPLVDIEIRIDELTAFANDDPFTGVELDQFDKVYTGVLTATKYVSHTDSATFHIEVPDDMNVSVLEAIKKLDDGTVTTVKSLDWSYNLKSQMLTVYFGEVVEECAITLGIYTV
Physico‐chemical
properties
protein length:854 AA
molecular weight: 92919,92690 Da
isoelectric point:4,74551
aromaticity:0,09251
hydropathy:-0,24239

Domains

Domains [InterPro]
DC_0389
STR
1–854
DC_0389
XPP57004.1
1 854
Architecture
STR
STR 1-854
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPP57004.1
1 854
Domain Start End Length (AA) Confidence
N-terminal 1 350 350 0,4528
Central domain 351 565 216 0,2041
C-terminal 566 854 288 0,8472
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-350
Central
351-565
C-terminal
566-854

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Luma
[NCBI] 		3388592 Viruses >
Host Vibrio campbellii
[NCBI] 		680 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPP57004.1 [NCBI]
Genbank nucleotide accession
PQ768828.1 [NCBI]
CDS location
range 91298 -> 93862
strand +
CDS
ATGACAAAAATAACAGTTGGTACTCCAGTTACAGCACCTCTTACACCAGGTCGTGATGACACCAATGTTTGGCCAACACATTTAGCCAAGTATGGTGCTGGTGGTTTAGAGGTAGTAGAGACTACCTCTGATAGAGATGGTATTTCAGATGCTAGAAAAATGGATAAAGCTGTACTAGTACGTTCAGACGATGGAGGGCGAGCAGCCCTCTATGAATGGTCTTCAGGTGGTTGGAATAAAGTAGATATCGGCGATTTCTCTGGTATGACAATCACAGATGGAGCTAATGTCTTTAACGATATAGTAGAAATAAAATTAGCTAATATGACAGCTAATCAGTACCCTAACGACTCAATTGACTCTGTGACACTAACAGCAGAGGGATCTCTAGATTGGGCTACGATGGGTGATCCTTCCTCTGGTAGTAGAGCAACATCAGTATTAGTAGAGCCACCTCTACAAACATACCCAGACCCAGATAATACCGGGGTTACTCGTCTTAGAGTGAAGGAAGGTTCCTATGAGCCAATGAAAGCTCCAGGATACTTAGCTTACGTTGACTTCCCAGAAAAAGTAATCGGTAAGTTGGGCTACCATACTCTAGGTCACTACGATAGTGCTATTTGGCCTACTGATACGGTAGTATCTGGTGGTGGGTTAATTCCTACTATTGCGGACAAAAAGAACATTGGTCTACAAGAGTATGACGGTAAAGACCCTAATAAGACAGGTGGTACAGACTTTTTAGTAGCTTTCCGAGTTGCTTTTAAAGGTCATGCTGTAAATGCAGGTAAAATTAAAGCATACCTAGCTAAACAACCTGCACCCGGTACATCCGACTCTGCTGATTACCTAAGAGATGTAAACGGTGAGTTACTAGTTCGAGAAGTGAACTATAAAGCCGGAGATGAGTATGGCCATATAGAGGTACTTGGTATTGTTAATGCCAAAGGTCTTACTAACATGTCTATGCACATTGAACATAACTTCAGTGATAGCTTACTTATTGAAGAGCGTGCTGTAGGGCTATCTGGTGTGATGGTACAAGCATTAGAATCTAAGTCTAAAACCGGTGCTGCATTAATGCAGTATGAAATAGATACTAAACAAAACATTGAGTTTAATAAAATCTATTACGGTGACAGCATTATGGATTTCAACTGGGAAGCTACTCATGGCTTACCAATGGAAGAAATCCAAGCAGGTGTAGGGGCAAACCTGCCTGATGGTTTCCACTTTAAGAACCTGTCAAACATCTATATCAGTAGTAAAGATGACCACATCTATGTACACGATGCTGGTACAGTGTGTGACTTCAGTCTAGGTAAGATCTTTAATGCCTTCGATACTAGATCATTGCATGGTAAAGAAATCAACGTTAAAGCTACGATTATAGACAAAGATGCACCATTTACTATTGGTGTAGTTAAATGGACAGGAAAACCAGACCAATACACTAATAACATCTTCTCTAGCAGAAACAGTGCAACGGTTGTATTTGACGCTGGCTGGGAACTAGTAGGTTCGCTATTCTTCCCTTCAGAATCTGTAACAGGTGACCATACACTAACTAAGAAGTTTACAGTTCCTTCGGATGCTAATAACTTTGCAGTTATTATTTATCCTGGCGTGCCTAACTCCCCGCTTACACTGAAGATTAAGGACTTTGATGTTGATGTAGTTAATCCTTTCTACGGCTATGAAATGTATGTGGCTGGAAAGCTCAATGAACTACACCTAGAAGAAGACACTGAGTTTGCACACTTCAGTCAAGCTAACGAGAATTATGTATCTCTACGCTATACAATAGGTAAGTCAGCAGATGGTGACCCAATGCCTGTTGGTGTTTTGAGAAAAGGTAAAGCTGATATTACTCTAGACCCATCAATCAATAAAATTGTTGGTTCAGCTGCTACTAGTGGTGAAGGTGGTCTTAAATTCGGAAAAGATGGTAAAGCTATTGTTGATACCACTTTATGGATTCATTCAGAGCAACCTGAAAAGACTGCATCAGACGTTACATTCTGGTATGAGTTAGTTAACTCTCACGGCATAGCTACTAAGATTATTCCATCAGAAACTACCTTTAAGGTTAGTGGTGACTCTTCAGGGGATTACTCAATGAAAGAGTTTTCACTTGATGTAATAACTGGCGATAGAATAGTTCTTAAAGCTTCTGCTGATAAAGATGATGGTGCATTTATTCAATCCAACTCACCAGCACACCCACTGGTTGATATTGAGATTAGAATTGATGAGTTAACCGCTTTTGCTAATGACGACCCATTTACAGGTGTAGAGCTAGATCAATTTGATAAAGTATACACCGGAGTACTTACAGCTACTAAATATGTATCACATACTGACTCAGCTACCTTCCATATTGAGGTACCAGATGATATGAATGTGTCAGTGCTAGAAGCTATTAAGAAACTAGATGATGGTACAGTAACAACAGTGAAAAGCCTAGACTGGTCTTACAACTTGAAATCACAAATGCTAACAGTGTATTTTGGTGAAGTTGTAGAGGAATGTGCTATTACTCTAGGTATTTATACAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
007a2f20a068972b502a8f7ac2b2c38d495f44063118975e142cc064cfa6a3ad
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2974
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50