Protein

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Genbank accession
WYW01620.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MATLGFKRTVSAPVGLELSGNKLSYNWYYPDEDYIRANFRSLQDIVKKGWAVCSNAYLVNFPSFGELDAYHPTLGVSTTPVVSMVELTTTHLAGDHKYLQAVLLGNIPVLLLSDGVNWRNISANNAIVATDPGGEVTPPAPLNALKMATQWNAIHWYVETPTDIVPGATEARYVSNMVHFVGGGALKTIALSFPNWYLYTGDGPVANGGSALPLDKAVIEYNSIVVPVTFNGARSKLIPDGASDVVCDEIPASAFGLEEIPNLSKLLVRTQFTFAAGGKIVFSDRKVSAVPGTQVMVGNTANTQFSDIDLPGQITYSGTYPEMRVSGYCPFVIGRHTDPDAVAIAAIGDSITVGVGDYEANPSGTGWFQRVIGKLPGKPAAINLSVAGTISLAGSTDDRLQDYFKYCNKGIAFYGTNDMSFGATPDGTRDRLKNRVLQMKSKGIQTVGVAKCLMKTTSTDAWATEDNQTLESAIWGAGNTIEQFNDLLPLSGFDFVIPFLSVRGVTDKYKWRPMGTADGIHPAVQANKDMCDEALPLMQSAFYP
Physico‐chemical
properties
protein length:544 AA
molecular weight: 58504,71930 Da
isoelectric point:5,27212
aromaticity:0,09743
hydropathy:-0,02665

Domains

Domains [InterPro]
DC_1250
STR
1–345
DC_1250 IPR013830
IPR036514
STR
335–539
IPR036514
SSF52266
STR
342–540
SSF52266
cd00229
ENZ
344–530
cd00229
WYW01620.1
1 544
Architecture
STR
STR 1-540 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW01620.1
1 544
Domain Start End Length (AA) Confidence
N-terminal 1 318 318 0,5244
Central domain 319 517 200 0,3126
C-terminal 518 544 26 0,5601
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-318
Central
319-517
C-terminal
518-544

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuM-Amme-1
[NCBI] 		3132643 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW01620.1 [NCBI]
Genbank nucleotide accession
PP496439 [NCBI]
CDS location
range 188213 -> 189847
strand +
CDS
ATGGCAACCCTTGGATTCAAAAGGACAGTGTCTGCCCCCGTAGGACTGGAACTTTCAGGCAACAAACTCAGTTACAACTGGTATTACCCGGATGAAGATTATATCCGGGCTAATTTCCGTAGTCTGCAGGACATCGTGAAGAAAGGTTGGGCAGTTTGTTCCAATGCTTACCTAGTAAACTTCCCTTCGTTCGGGGAACTGGATGCGTACCATCCTACCTTGGGTGTATCTACAACACCCGTAGTGTCTATGGTAGAACTTACCACCACCCATCTGGCTGGGGATCATAAGTACCTGCAAGCCGTCCTGCTAGGTAATATCCCGGTTCTTCTTCTTAGCGATGGCGTGAACTGGCGTAACATCTCGGCCAACAACGCCATTGTCGCCACGGACCCCGGCGGTGAAGTAACCCCGCCAGCCCCGTTGAACGCACTCAAGATGGCAACCCAGTGGAATGCTATTCACTGGTACGTCGAGACACCTACTGATATCGTTCCAGGTGCAACTGAAGCAAGGTACGTGTCCAACATGGTTCACTTCGTCGGCGGCGGCGCCCTGAAGACCATTGCGCTGAGTTTCCCGAACTGGTATCTGTACACGGGTGACGGTCCGGTTGCTAACGGAGGCAGCGCGTTGCCACTGGACAAGGCAGTTATCGAATACAACAGCATCGTTGTCCCCGTAACCTTCAACGGTGCGCGGTCGAAGCTGATTCCAGACGGAGCTAGTGACGTAGTGTGCGATGAGATTCCTGCCAGTGCATTCGGCTTGGAAGAGATTCCTAATCTGTCCAAGTTGCTGGTGCGAACACAGTTCACCTTTGCGGCGGGTGGAAAGATTGTATTCTCGGATCGGAAAGTAAGCGCGGTACCGGGAACTCAGGTAATGGTCGGCAATACGGCCAATACCCAGTTCTCTGATATTGATTTGCCGGGTCAGATTACTTATAGTGGTACCTACCCTGAGATGCGGGTCTCAGGTTACTGTCCTTTCGTTATCGGACGGCATACCGATCCAGACGCAGTTGCCATCGCGGCCATTGGCGATTCGATCACCGTAGGCGTAGGTGATTATGAGGCCAACCCTTCCGGGACAGGCTGGTTCCAACGTGTCATTGGCAAGTTGCCGGGCAAACCCGCAGCAATCAACCTGTCAGTGGCCGGTACTATCTCACTGGCGGGTAGCACGGATGATCGCCTTCAGGATTACTTCAAATACTGCAACAAGGGTATCGCGTTCTACGGGACCAACGATATGTCCTTTGGTGCAACCCCTGACGGAACCCGTGACCGTCTGAAGAATCGTGTACTGCAGATGAAATCTAAGGGCATTCAGACCGTAGGGGTTGCCAAGTGCCTGATGAAAACCACGTCTACCGACGCGTGGGCTACCGAGGATAACCAGACGCTGGAATCAGCTATCTGGGGTGCGGGTAACACCATCGAACAGTTCAATGACCTGTTGCCGTTGTCTGGCTTCGACTTCGTTATCCCTTTCCTCAGTGTTCGAGGCGTAACCGACAAATACAAGTGGAGACCAATGGGCACCGCTGATGGTATTCACCCCGCTGTTCAAGCGAACAAAGACATGTGCGACGAAGCGCTTCCTCTTATGCAGTCAGCCTTCTATCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a3d4253359e095a63b227b1bd0c6fa037ac5f01549fa5651e36105650bba3f3d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7584
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank