Protein

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Genbank accession
AND75138.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSITRTNTLADVNGNNSINVSELASKVVMSAPEGASKIGYGNRTQEQKNGDVLSVRDYITTAVNGVTSNQAGIVAAVAAAKSSGASLHWPAGTYVSTASIPDFHSVRHTGPGVVKRGTNLFSISQFDSAMNTLFVSTSGLTTNDGLSSTEAMLSPNAAVNLWGAKYAATACGPWKIKIAAGTYFESIIAQGYQSNKEIFLEGEYDAVNQVPLTIMDGSVGATNSGIIFTTYGWVNCKWILCQNFTTVGAGGFNIGNYGRMTIDTCHAYNNNLVGFSAAQAADLRIIGRCYIKPSANGTGVTYYRQCTGSWSDATGEIIIDGFNNAATTGVLVRDNSYVVAGCKLTVRNCTSQAVWLRRHSYLEVRDYEITNNNIAFDLRDLSLLAPNGGTQVLTGNTQDYAYKNFSLPWDTASNMAIGADGPSVQAPSAGNYALVVSGKSQVGQQFLTDASTSTINIDFNKKGSLVYAQTDNTLRIALNSADAYRFAASVFYPTVDNAKTLGGSSFRWSTIYAGTSTINTSDETAKQQIKPIDDACLRAWANVEYVQYKFNDAVEAKGDGARWHFGLIAQRVKKAFEDEGLNAFDYGLLCYDEWDEQPEEVDEEGNIIQAYLAAGSRYGIRYEEALALECAYLRSLLKK
Physico‐chemical
properties
protein length:639 AA
molecular weight: 68852,91380 Da
isoelectric point:5,28883
aromaticity:0,10172
hydropathy:-0,17199

Domains

Domains [InterPro]
DC_1853
STR
1–551
DC_1853
IPR018247
Unmapped
11–23
IPR018247 IPR011050 IPR012334 IPR030392
SSF69349
STR
467–520
SSF69349 cd10144
IPR024430
ENZ
469–520
IPR024430 IPR030392
IPR036388
RBD
522–639
IPR036388
AND75138.1
1 639
Architecture
STR
RBD
STR 1-551 | RBD 552-639
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AND75138.1
1 639
Domain Start End Length (AA) Confidence
N-terminal 1 66 66 0,9675
Central domain 67 425 360 0,9557
C-terminal 426 639 213 0,9347
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-66
Central
67-425
C-terminal
426-639

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage pf16
[NCBI] 		1815630 Uroviricota > Caudoviricetes > Chakrabartyvirus >
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AND75138.1 [NCBI]
Genbank nucleotide accession
KU873925.1 [NCBI]
CDS location
range 146702 -> 148621
strand +
CDS
ATGTCAATCACCAGAACTAACACGTTGGCTGATGTGAATGGTAACAACTCCATTAATGTCAGCGAACTGGCGAGTAAAGTCGTCATGAGTGCGCCTGAAGGTGCATCAAAGATCGGGTACGGCAATCGAACTCAAGAGCAAAAGAACGGTGACGTACTCTCAGTTCGTGATTATATCACAACCGCAGTCAACGGCGTGACCAGCAACCAGGCGGGCATTGTTGCAGCCGTTGCAGCTGCTAAGTCTTCAGGAGCAAGTCTCCATTGGCCTGCCGGCACATATGTGTCCACCGCAAGTATTCCTGACTTCCACTCAGTTCGCCACACAGGTCCTGGCGTTGTAAAACGCGGTACAAACCTGTTCAGCATCAGTCAGTTTGACTCAGCAATGAACACGCTGTTCGTTAGCACTTCCGGGTTGACTACCAATGACGGCCTTTCATCGACTGAGGCAATGCTTAGCCCTAACGCTGCCGTTAACCTGTGGGGTGCAAAGTACGCTGCAACTGCATGCGGGCCATGGAAAATCAAAATCGCAGCAGGTACCTACTTTGAGAGTATCATTGCTCAAGGGTACCAGTCAAACAAAGAGATTTTCCTTGAGGGTGAGTATGACGCAGTCAACCAGGTCCCACTCACGATCATGGATGGCTCTGTTGGAGCGACAAACAGTGGGATCATCTTCACTACCTACGGGTGGGTGAACTGCAAATGGATACTTTGCCAAAACTTCACTACCGTTGGCGCAGGCGGTTTCAACATCGGCAACTATGGTCGCATGACTATTGACACTTGCCATGCGTACAACAACAACCTGGTTGGCTTCAGTGCAGCTCAAGCAGCTGACTTGCGCATCATTGGTCGTTGCTATATCAAGCCGTCAGCAAACGGCACTGGTGTTACCTACTACCGGCAGTGCACAGGTAGCTGGTCTGATGCCACGGGTGAGATCATTATCGATGGTTTCAACAACGCAGCGACCACTGGTGTTCTGGTTCGTGACAACTCGTATGTGGTTGCAGGGTGCAAACTGACGGTCCGGAACTGCACATCGCAAGCAGTTTGGTTGCGTCGCCATTCGTACCTTGAAGTGCGTGATTACGAGATCACCAACAACAACATCGCGTTCGACCTGCGTGACTTGTCCCTGCTTGCACCAAACGGCGGCACTCAAGTTCTGACGGGCAACACTCAAGATTATGCTTACAAGAACTTCTCACTGCCATGGGACACTGCTTCAAACATGGCTATTGGTGCAGATGGTCCATCTGTTCAAGCACCTTCTGCTGGTAACTACGCACTGGTAGTTTCAGGCAAAAGCCAAGTGGGCCAACAGTTCCTGACTGATGCATCAACTTCAACGATCAACATTGATTTCAACAAGAAAGGCAGTTTGGTCTACGCGCAAACTGACAACACTTTGCGGATTGCGCTTAACAGTGCAGACGCTTATCGCTTTGCAGCTTCAGTGTTCTACCCTACTGTTGACAACGCAAAAACACTGGGTGGTTCATCATTCAGGTGGTCAACCATCTACGCCGGTACTAGTACTATCAACACCTCGGATGAAACCGCTAAGCAGCAGATCAAGCCGATTGACGACGCGTGTCTGCGCGCATGGGCCAACGTTGAATACGTCCAGTACAAATTCAACGACGCAGTTGAAGCAAAGGGCGATGGTGCTCGTTGGCACTTCGGTCTGATTGCTCAGCGCGTCAAGAAGGCGTTTGAGGATGAAGGTCTCAATGCGTTCGACTACGGTCTGCTCTGCTATGACGAGTGGGACGAACAGCCGGAAGAGGTTGACGAAGAAGGTAACATCATCCAAGCATACCTTGCAGCGGGCAGCCGTTACGGCATCCGTTACGAGGAAGCGCTTGCACTTGAGTGCGCCTATCTGCGTAGTCTGTTGAAGAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
de5625d6b54a08f2d4b46553735502e8054b5385711a911ec4436011c7df7400
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7848
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterisation of pf16 and phiPMW: Two novel phages infecting Pseudomonas putida PpG1 Magill,D.J., Krylov,V.N., Shaburova,O.V., Allen,C.C.R., McGrath,J.W., Quinn,J.P. and Kulakov,L.A. 2017-09-06 — GenBank