Protein

View in Explore
Genbank accession
AAM88708.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSKIWEPSGGVDDKVLFGMYPEDLDAQDRQELYAEAFEDIVKSYSTMATACRYQAIIDEMIDDETRAQLIADTQAAMEAVSIARTAMDSISESSTAMDPISESIVAMEAVIDSDDIALPAVVESQIAMDAVSTSQTAMDAVSDSQTAMDAVSDSQTAMDAVSVSQTAMDAVSDSQTAMDAVSDSQTAMDAVSDSQTAMDAVSVSTVAMEAVAASALAMDAVIASDDIALPTIVEEEIAMDAVSTSDTAMDAVSTSETAMDAVGGSQTAMDAVAGSQTAMDAVAASIMPRSALFDSDYAVSSLWAASPGARTILEEGGSPTLPHTYDDSRSGSSGTHLRIEDGSDISLPGNATSALEIEVVDSDDPYRRGLTLELDLSNATTLEFEMRADSVPDSRIDHGVEVDGSTLFSNSGNSSWTNRSVDVSEYSGTHDVLFFTDTDSWTGGDWMTYFSNINLI
Physico‐chemical
properties
protein length:456 AA
molecular weight: 47938,83360 Da
isoelectric point:4,05003
aromaticity:0,04825
hydropathy:-0,07281

Domains

Domains [InterPro]
DC_1194
STR
10–204
DC_1194
DC_1194
STR
186–455
DC_1194
AAM88708.1
1 456
Architecture
STR
STR 10-455 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Natrialba phage PhiCh1
[NCBI] 		114777 Uroviricota > Caudoviricetes > Vertoviridae > Myohalovirus alkaliphilum > Myohalovirus phiCh1
Host Natrialba magadii ATCC 43099
[NCBI] 		547559 Methanobacteriota > Halobacteria > Halobacteriales > Natrialbaceae > Natrialba > Natrialba magadii

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAM88708.1 [NCBI]
Genbank nucleotide accession
AF440695.1 [NCBI]
CDS location
range 23246 -> 24616
strand +
CDS
ATGAGTAAAATCTGGGAACCGAGCGGTGGCGTCGACGACAAGGTCCTCTTTGGGATGTACCCCGAGGACCTCGACGCCCAGGATCGACAAGAACTGTACGCTGAGGCGTTCGAGGATATCGTCAAGTCCTACTCGACGATGGCGACCGCCTGCCGGTATCAGGCGATCATCGATGAGATGATCGACGACGAAACTCGAGCCCAGCTGATCGCTGACACGCAGGCGGCGATGGAAGCGGTCAGTATCGCCCGGACCGCGATGGACTCGATCAGCGAGTCGTCCACAGCTATGGATCCGATCAGCGAGTCCATCGTCGCGATGGAGGCCGTGATCGATTCGGACGATATCGCGCTCCCCGCTGTCGTCGAGAGCCAGATCGCGATGGACGCGGTGAGCACGTCGCAGACCGCAATGGACGCGGTGAGCGACTCCCAGACGGCAATGGACGCGGTGAGCGACTCCCAGACGGCAATGGACGCGGTGAGCGTCTCCCAGACGGCGATGGACGCGGTGAGCGACTCCCAGACGGCAATGGACGCGGTGAGCGACTCCCAGACGGCAATGGACGCGGTGAGCGACTCCCAGACGGCAATGGACGCGGTGAGCGTCTCCACCGTCGCGATGGAGGCAGTCGCCGCCAGCGCCCTCGCGATGGACGCGGTGATCGCTTCAGACGATATCGCGTTACCGACGATTGTCGAAGAGGAGATCGCGATGGACGCGGTAAGTACGTCCGACACCGCGATGGACGCGGTAAGTACGTCCGAAACAGCGATGGATGCGGTTGGGGGCTCCCAGACGGCGATGGACGCGGTTGCGGGCTCCCAGACGGCGATGGACGCGGTTGCGGCGTCCATCATGCCGCGAAGTGCGCTCTTCGACTCTGACTACGCTGTTTCCTCTCTTTGGGCGGCGTCTCCGGGCGCAAGGACTATCCTCGAAGAGGGAGGTTCACCGACGCTCCCGCACACCTACGACGACAGCCGTTCAGGATCGTCTGGGACACACCTCCGAATCGAAGACGGAAGCGACATCAGTCTCCCTGGAAACGCTACGTCGGCCCTCGAAATCGAGGTTGTTGATTCCGACGATCCCTACCGTCGTGGTCTCACATTGGAGTTGGATCTGAGCAACGCGACCACGCTCGAGTTCGAGATGCGAGCCGACTCCGTCCCTGACTCTCGTATTGATCACGGAGTCGAGGTTGACGGATCCACCCTATTCTCGAATAGCGGGAATAGCAGCTGGACGAATCGGAGCGTAGATGTTTCGGAGTACAGTGGTACCCACGACGTACTGTTCTTCACGGATACTGATTCGTGGACTGGCGGCGACTGGATGACCTACTTCAGCAATATAAACCTGATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
eceb381e185bc10cc6a0355d63f20f401a9cecc3f94d6b7999efe26f8637fa48
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8304
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequence analysis of the temperate virus PhiCh1 infecting the haloalkalophilic archaeon Natrialba magadii Klein,R., Baranyi,U., Roessler,N., Greineder,B. and Scholz,H. 2002-07-25 — GenBank